C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: H3 histone, family 3A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163041 H3F3A 9606 + 1:226061851-226072001 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000366813 H3F3A-002 226063977-226072001 protein_coding
  ENST00000366814 H3F3A-003 226062714-226067269 protein_coding
  ENST00000366815 H3F3A-001 226062678-226071999 protein_coding
  ENST00000366816 H3F3A-004 226061851-226071523 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000366815
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000366815 135.616±0.00 197.020±0.00 25.254±0.00 87.108±51.75 106.051±27.40 166.506±80.52 65.366±45.13 118.350±70.97 66.432±23.15 182.692±110.72 45.844±23.96 181.407±67.71 229.139±27.54 169.848±60.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007R5 CIL_0007R5_0001 VISTA 1:225466688-226068183

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000228 IDA nuclear chromosome
GO:0000786 IEA nucleosome
GO:0000788 IDA nuclear nucleosome
GO:0000979 IDA RNA polymerase II core promoter sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005634 IEA:IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006336 IDA DNA replication-independent nucleosome assembly
GO:0007596 TAS blood coagulation
GO:0030307 IMP positive regulation of cell growth
GO:0031492 IDA nucleosomal DNA binding
GO:0043234 IDA protein complex
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020504 h3f3a H3 histone, family 3A protein_coding Danio_rerio
ENSMUSG00000016559 H3f3b H3 histone, family 3B protein_coding Mus_musculus

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