C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: H3 histone, family 3B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000016559 H3f3b 10090 - 11:116021912-116027962 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000016703 H3f3b-201 116021961-116024504 protein_coding
  ENSMUST00000106454 H3f3b-001 116021912-116027962 protein_coding
  ENSMUST00000139378 H3f3b-003 116023509-116024473 processed_transcript
  ENSMUST00000139623 H3f3b-002 116023193-116024514 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000016703ENSMUST00000139378ENSMUST00000139623
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000016703 69.294±37.47 40.182±6.27 120.504±8.09 260.945±186.75 77.815±38.30 168.726±35.20 27.330±5.15 60.922±17.60 115.775±80.43 165.665±5.57 16.905±1.81 98.914±28.63 111.435±73.49 88.380±39.64
ENSMUST00000139378 N/A 5.354±0.00 N/A 43.605±0.00 13.753±0.00 N/A N/A N/A N/A N/A N/A 40.942±36.51 63.620±0.00 N/A
ENSMUST00000139623 23.245±5.77 N/A 80.409±18.54 51.761±0.00 21.108±1.97 30.646±0.00 12.049±3.20 30.323±10.29 92.939±21.37 N/A 12.049±1.55 123.985±0.00 183.548±77.60 84.199±3.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00078Q CIL_00078Q_0002 CGP 11:116008457-116027962
CIL_0008WF CIL_0008WF_0002 VISTA 11:116019003-116619995
CIL_00078R CIL_00078R_0002 CGP 11:116021912-116061214

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005654 TAS nucleoplasm
GO:0007420 IEA brain development
GO:0009725 IEA response to hormone
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020504 h3f3a H3 histone, family 3A protein_coding Danio_rerio
ENSG00000132475 H3F3B H3 histone, family 3B (H3.3B) protein_coding Homo_sapiens
ENSG00000163041 H3F3A H3 histone, family 3A protein_coding Homo_sapiens

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