C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 25
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163481 RNF25 9606 - 2:218663864-218672411 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000295704 RNF25-001 218663864-218672411 protein_coding
  ENST00000423170 RNF25-004 218665154-218671967 nonsense_mediated_decay
  ENST00000463188 RNF25-003 218664827-218671984 retained_intron
  ENST00000473034 RNF25-002 218663892-218671977 retained_intron
  ENST00000474339 RNF25-006 218664167-218664901 retained_intron
  ENST00000497832 RNF25-005 218665932-218668168 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000295704ENST00000423170ENST00000463188ENST00000473034ENST00000474339
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000295704 1.948±0.00 6.409±0.00 4.114±0.48 2.057±0.86 1.791±0.54 1.192±0.92 4.371±2.65 1.828±0.00 1.528±0.74 2.366±0.98 8.649±7.93 7.530±3.10 11.336±0.00
ENST00000423170 N/A N/A N/A N/A N/A N/A N/A N/A 3.385±0.00 3.332±0.00 N/A N/A N/A
ENST00000463188 2.891±0.00 N/A 4.956±0.00 N/A N/A 0.818±0.00 N/A 3.250±0.00 N/A N/A N/A 7.417±0.00 N/A
ENST00000473034 N/A N/A N/A N/A 1.052±0.00 N/A N/A 1.205±0.00 N/A N/A N/A N/A N/A
ENST00000474339 9.967±0.00 21.855±0.00 11.934±0.49 13.196±0.00 8.142±0.00 3.150±1.64 3.589±0.00 N/A 7.011±0.00 5.190±0.00 N/A 10.077±1.41 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000654 CIL_000654_0001 CGP 2:218658764-218672411
CIL_0006PW CIL_0006PW_0001 CGP 2:218663864-218702716

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005829 IDA cytosol
GO:0008270 IEA zinc ion binding
GO:0016567 ISS protein ubiquitination
GO:0016874 IEA ligase activity
GO:0051059 IPI NF-kappaB binding
GO:0051092 IDA positive regulation of NF-kappaB transcription factor activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000027182 rnf25 ring finger protein 25 protein_coding Danio_rerio
ENSMUSG00000026171 Rnf25 ring finger protein 25 protein_coding Mus_musculus

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