C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 25
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026171 Rnf25 10090 - 1:74593748-74601397 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027357 Rnf25-001 74593748-74601397 protein_coding
  ENSMUST00000113721 Rnf25-003 74593753-74601377 protein_coding
  ENSMUST00000127938 Rnf25-009 74595209-74600564 protein_coding
  ENSMUST00000128491 Rnf25-006 74598550-74601394 retained_intron
  ENSMUST00000132081 Rnf25-008 74598733-74601365 protein_coding
  ENSMUST00000135140 Rnf25-002 74593748-74601372 nonsense_mediated_decay
  ENSMUST00000136078 Rnf25-005 74598363-74601345 protein_coding
  ENSMUST00000149649 Rnf25-007 74594222-74594801 retained_intron
  ENSMUST00000151003 Rnf25-010 74598185-74598597 retained_intron
  ENSMUST00000154874 Rnf25-004 74595885-74600599 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027357ENSMUST00000113721ENSMUST00000127938ENSMUST00000135140
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027357 13.696±4.93 7.045±1.87 21.770±4.06 23.469±19.94 11.167±1.17 10.855±0.96 4.048±1.94 8.679±2.59 9.538±4.48 9.491±0.62 4.949±1.41 9.156±2.92 15.174±6.55 55.704±30.11
ENSMUST00000113721 9.130±1.77 5.796±2.22 14.625±0.00 16.131±14.05 9.309±2.53 7.918±1.17 5.268±1.04 7.249±0.54 5.779±0.79 4.187±0.96 3.325±0.42 11.421±2.60 5.125±1.50 11.152±9.38
ENSMUST00000127938 N/A 5.007±0.00 N/A N/A 6.726±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135140 N/A N/A N/A 8.684±0.00 N/A N/A N/A N/A N/A N/A 1.005±0.05 N/A 3.616±0.89 4.690±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000654 CIL_000654_0002 CGP 1:74588289-74601397
CIL_0006PW CIL_0006PW_0002 CGP 1:74593748-74636894

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005829 ISS cytosol
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0051059 ISS NF-kappaB binding
GO:0051092 ISS positive regulation of NF-kappaB transcription factor activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000027182 rnf25 ring finger protein 25 protein_coding Danio_rerio
ENSG00000163481 RNF25 ring finger protein 25 protein_coding Homo_sapiens

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