C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 25
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000295704 RNF25-001 ENSG00000163481 9606 - 2:218663864-218672411 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000295704
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000295704 1.948±0.00 6.409±0.00 4.114±0.48 2.057±0.86 1.791±0.54 1.192±0.92 4.371±2.65 1.828±0.00 1.528±0.74 2.366±0.98 8.649±7.93 7.530±3.10 11.336±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000654 CIL_000654_0001 CGP 2:218658764-218672411
CIL_0006PW CIL_0006PW_0001 CGP 2:218663864-218702716

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005829 IDA cytosol
GO:0008270 IEA zinc ion binding
GO:0016567 ISS protein ubiquitination
GO:0016874 IEA ligase activity
GO:0051059 IPI NF-kappaB binding
GO:0051092 IDA positive regulation of NF-kappaB transcription factor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027357 Rnf25-001 protein_coding Mus_musculus 0 1454
ENSMUST00000113721 Rnf25-003 protein_coding Mus_musculus 0 1423
ENSMUST00000135140 Rnf25-002 nonsense_mediated_decay Mus_musculus 0 1284
ENSMUST00000127938 Rnf25-009 protein_coding Mus_musculus 0 654
ENSMUST00000136078 Rnf25-005 protein_coding Mus_musculus 0 348
ENSMUST00000128491 Rnf25-006 retained_intron Mus_musculus 0 268
ENSMUST00000132081 Rnf25-008 protein_coding Mus_musculus 7e-37 159

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