C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polybromo 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163939 PBRM1 9606 - 3:52545352-52685917 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000296302 PBRM1-008 52547990-52679713 protein_coding
  ENST00000337303 PBRM1-009 52547990-52679714 protein_coding
  ENST00000356770 PBRM1-001 52545352-52679714 protein_coding
  ENST00000394830 PBRM1-002 52547841-52685836 protein_coding
  ENST00000409057 PBRM1-003 52547991-52679714 protein_coding
  ENST00000409114 PBRM1-006 52548010-52679714 protein_coding
  ENST00000409767 PBRM1-005 52548011-52679714 protein_coding
  ENST00000410007 PBRM1-007 52547991-52679714 protein_coding
  ENST00000412587 PBRM1-020 52547990-52679714 nonsense_mediated_decay
  ENST00000420148 PBRM1-013 52662204-52685917 protein_coding
  ENST00000423351 PBRM1-019 52554783-52679714 protein_coding
  ENST00000424867 PBRM1-014 52679634-52685794 protein_coding
  ENST00000431678 PBRM1-018 52651764-52685850 protein_coding
  ENST00000439181 PBRM1-015 52679582-52685578 protein_coding
  ENST00000446103 PBRM1-004 52586430-52678567 protein_coding
  ENST00000449505 PBRM1-016 52668527-52685582 protein_coding
  ENST00000450271 PBRM1-017 52668621-52685850 protein_coding
  ENST00000458294 PBRM1-012 52679583-52685882 protein_coding
  ENST00000462207 PBRM1-010 52585473-52609461 retained_intron
  ENST00000480064 PBRM1-011 52609086-52615399 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000356770ENST00000409767ENST00000410007ENST00000423351ENST00000446103
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000356770 8.571±0.00 8.099±0.00 1.172±0.00 2.433±0.00 6.603±2.32 N/A 1.709±0.00 4.452±0.00 2.695±0.00 5.440±0.00 1.006±0.00 4.546±1.25 5.354±0.20 3.298±1.19
ENST00000409767 N/A N/A N/A 1.519±0.00 N/A N/A N/A N/A N/A N/A 1.888±0.00 N/A N/A N/A
ENST00000410007 N/A N/A 1.231±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000423351 N/A N/A 1.999±0.00 N/A 4.615±0.00 4.576±0.00 N/A 2.578±0.00 4.971±0.00 N/A 1.582±0.00 4.198±0.00 N/A N/A
ENST00000446103 N/A N/A N/A N/A 4.239±0.00 N/A 2.544±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WP CIL_0007WP_0001 VISTA 3:52127966-52731115
CIL_0002P4 CIL_0002P4_0002 CGP 3:52545352-52694492

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000228 NAS nuclear chromosome
GO:0000776 IEA kinetochore
GO:0001890 IEA placenta development
GO:0003677 IEA DNA binding
GO:0003682 NAS:IEA chromatin binding
GO:0005515 IPI:IEA protein binding
GO:0006338 TAS chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007067 TAS mitotic nuclear division
GO:0007507 IEA heart development
GO:0008285 IMP negative regulation of cell proliferation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003877 PBRM1 (1 of 2) polybromo 1 protein_coding Danio_rerio
ENSDARG00000077038 pbrm1l polybromo 1, like protein_coding Danio_rerio
ENSMUSG00000042323 Pbrm1 polybromo 1 protein_coding Mus_musculus

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