C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromosome 1 open reading frame 50
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164008 C1orf50 9606 + 1:42767269-42794493 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000372525 C1orf50-001 42767269-42775747 protein_coding
  ENST00000464081 C1orf50-004 42767292-42794493 nonsense_mediated_decay
  ENST00000468913 C1orf50-007 42769678-42775428 processed_transcript
  ENST00000494155 C1orf50-003 42773187-42774770 retained_intron
  ENST00000603943 C1orf50-008 42767306-42789937 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372525ENST00000468913ENST00000494155ENST00000603943
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372525 4.217±0.00 4.340±0.00 0.341±0.00 2.693±1.32 2.221±0.71 3.268±2.28 2.350±1.49 2.816±1.77 2.862±1.59 1.275±0.97 4.334±1.19 3.188±2.73 4.149±1.77 7.671±3.53
ENST00000468913 N/A N/A N/A N/A N/A N/A 1.048±0.00 N/A N/A 0.914±0.00 N/A 0.421±0.00 N/A N/A
ENST00000494155 N/A N/A 0.207±0.00 N/A N/A 0.404±0.00 N/A N/A N/A N/A N/A 0.425±0.00 N/A 0.837±0.00
ENST00000603943 N/A N/A 0.060±0.00 N/A 1.711±0.00 N/A N/A 1.010±0.00 N/A 0.698±0.00 N/A 0.855±0.00 N/A 2.760±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PM CIL_0008PM_0001 VISTA 1:42456139-43057783
CIL_0005B2 CIL_0005B2_0002 CGP 1:42746335-42794493
CIL_0008N2 CIL_0008N2_0001 VISTA 1:42758169-43359178

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071211 C11H1orf50 chromosome 1 open reading frame 50 protein_coding Danio_rerio
ENSMUSG00000078584 AU022252 expressed sequence AU022252 protein_coding Mus_musculus

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