Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info
Description:	chromosome 1 open reading frame 50
Gene Accession	Gene Name	Tax ID	Strand	Position	Gene Biotype
ENSG00000164008	C1orf50	9606	+	1:42767269-42794493	protein_coding
	Transcript Accession		Transcript Name	Position	Transcript Biotype
	ENST00000372525		C1orf50-001	42767269-42775747	protein_coding
	ENST00000464081		C1orf50-004	42767292-42794493	nonsense_mediated_decay
	ENST00000468913		C1orf50-007	42769678-42775428	processed_transcript
	ENST00000494155		C1orf50-003	42773187-42774770	retained_intron
	ENST00000603943		C1orf50-008	42767306-42789937	nonsense_mediated_decay

Expression Patterns

Transcript ID	Adipose	Adrenal	Bladder	Brain	Breast	Colon	Heart	Kidney	Liver	Lung	Muscle	Ovary	Placenta	Testis
ENST00000372525	4.217±0.00	4.340±0.00	0.341±0.00	2.693±1.32	2.221±0.71	3.268±2.28	2.350±1.49	2.816±1.77	2.862±1.59	1.275±0.97	4.334±1.19	3.188±2.73	4.149±1.77	7.671±3.53
ENST00000468913	N/A	N/A	N/A	N/A	N/A	N/A	1.048±0.00	N/A	N/A	0.914±0.00	N/A	0.421±0.00	N/A	N/A
ENST00000494155	N/A	N/A	0.207±0.00	N/A	N/A	0.404±0.00	N/A	N/A	N/A	N/A	N/A	0.425±0.00	N/A	0.837±0.00
ENST00000603943	N/A	N/A	0.060±0.00	N/A	1.711±0.00	N/A	N/A	1.010±0.00	N/A	0.698±0.00	N/A	0.855±0.00	N/A	2.760±0.00

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_0008PM	CIL_0008PM_0001	VISTA	1:42456139-43057783
CIL_0005B2	CIL_0005B2_0002	CGP	1:42746335-42794493
CIL_0008N2	CIL_0008N2_0001	VISTA	1:42758169-43359178

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0003824	IEA	catalytic activity

Homologs
ENSEMBL Accession	Gene Name	Description	Biotype	Species
ENSDARG00000071211	C11H1orf50	chromosome 1 open reading frame 50	protein_coding	Danio_rerio
ENSMUSG00000078584	AU022252	expressed sequence AU022252	protein_coding	Mus_musculus

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