C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromosome 1 open reading frame 50
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000603943 C1orf50-008 ENSG00000164008 9606 + 1:42767306-42789937 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastKidneyLungOvaryTestisENST00000603943
Transcript ID Bladder Breast Kidney Lung Ovary Testis
ENST00000603943 0.060±0.00 1.711±0.00 1.010±0.00 0.698±0.00 0.855±0.00 2.760±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PM CIL_0008PM_0001 VISTA 1:42456139-43057783
CIL_0005B2 CIL_0005B2_0002 CGP 1:42746335-42794493
CIL_0008N2 CIL_0008N2_0001 VISTA 1:42758169-43359178

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000132778 AU022252-001 processed_transcript Mus_musculus 0 619
ENSMUST00000141112 AU022252-002 protein_coding Mus_musculus 0 597
ENSMUST00000144309 AU022252-003 processed_transcript Mus_musculus 0 446
ENSMUST00000046260 AU022252-004 processed_transcript Mus_musculus 0 418

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