C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: prenyl (decaprenyl) diphosphate synthase, subunit 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369031 PDSS2-002 ENSG00000164494 9606 - 6:107264186-107459564 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainLungOvaryPlacentaTestisENST00000369031
Transcript ID Adipose Adrenal Brain Lung Ovary Placenta Testis
ENST00000369031 1.037±0.00 1.668±0.00 0.701±0.00 0.721±0.00 3.383±0.41 2.657±0.36 1.355±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001OZ CIL_0001OZ_0002 CGP 6:107065182-107459564
CIL_0001OU CIL_0001OU_0002 CGP 6:107152557-107660167

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000010 IDA trans-hexaprenyltranstransferase activity
GO:0005737 IDA cytoplasm
GO:0005759 TAS mitochondrial matrix
GO:0006744 IEA ubiquinone biosynthetic process
GO:0008299 IDA:IEA isoprenoid biosynthetic process
GO:0044281 TAS small molecule metabolic process
GO:0046982 IDA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000160823 Pdss2-004 nonsense_mediated_decay Mus_musculus 0 771
ENSMUST00000095725 Pdss2-001 protein_coding Mus_musculus 0 771
ENSMUST00000160108 Pdss2-002 retained_intron Mus_musculus 0 745
ENSMUST00000159139 Pdss2-006 protein_coding Mus_musculus 0 734
ENSMUST00000162758 Pdss2-003 retained_intron Mus_musculus 0 357

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