C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: prenyl (decaprenyl) diphosphate synthase, subunit 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369037 PDSS2-001 ENSG00000164494 9606 - 6:107152557-107459563 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369037
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369037 1.560±0.00 1.339±0.00 0.400±0.00 1.669±0.26 2.880±0.88 2.906±0.13 3.110±1.26 5.382±1.59 4.032±1.96 1.728±0.43 1.055±0.02 3.245±0.37 1.658±0.56 1.590±0.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001OZ CIL_0001OZ_0002 CGP 6:107065182-107459564
CIL_0001OU CIL_0001OU_0002 CGP 6:107152557-107660167

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000010 IDA trans-hexaprenyltranstransferase activity
GO:0005737 IDA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005759 TAS mitochondrial matrix
GO:0006744 IEA ubiquinone biosynthetic process
GO:0008299 IDA:IEA isoprenoid biosynthetic process
GO:0044281 TAS small molecule metabolic process
GO:0046982 IDA protein heterodimerization activity
GO:0050347 IEA trans-octaprenyltranstransferase activity
GO:0050878 IEA regulation of body fluid levels
GO:0051290 IEA protein heterotetramerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000095725 Pdss2-001 protein_coding Mus_musculus 0 1832
ENSMUST00000160823 Pdss2-004 nonsense_mediated_decay Mus_musculus 0 1227
ENSMUST00000159139 Pdss2-006 protein_coding Mus_musculus 0 1221
ENSMUST00000160108 Pdss2-002 retained_intron Mus_musculus 0 749
ENSMUST00000162008 Pdss2-005 protein_coding Mus_musculus 0 433
ENSMUST00000162758 Pdss2-003 retained_intron Mus_musculus 0 361

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