C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CUB and Sushi multiple domains 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000455883 CSMD3-002 ENSG00000164796 9606 - 8:112222932-113436883 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastPlacentaENST00000455883
Transcript ID Brain Breast Placenta
ENST00000455883 2.060±0.00 0.023±0.00 0.003±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005RS CIL_0005RS_0001 CGP 8:109963645-113437099
CIL_0005RP CIL_0005RP_0001 CGP 8:112222928-115809673

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 IEA plasma membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000160658 Csmd3-004 protein_coding Mus_musculus 0 15030
ENSMUST00000100670 Csmd3-201 protein_coding Mus_musculus 0 9055
ENSMUST00000162830 Csmd3-001 protein_coding Mus_musculus 0 9055
ENSMUST00000161653 Csmd3-005 protein_coding Mus_musculus 0 4440
ENSDART00000108507 CR352286.1-201 protein_coding Danio_rerio 0 2294
ENSMUST00000162006 Csmd3-007 retained_intron Mus_musculus 0 2222
ENSMUST00000160655 Csmd3-002 retained_intron Mus_musculus 0 1805
ENSMUST00000160716 Csmd3-003 processed_transcript Mus_musculus 0 1543
ENSDART00000148564 protein_coding Danio_rerio 0 1415
ENSDART00000006458 protein_coding Danio_rerio 0 1188
ENSMUST00000110261 Csmd3-006 retained_intron Mus_musculus 0 662
ENSMUST00000082104 Csmd1-001 protein_coding Mus_musculus 0 340
ENSMUST00000131778 Csmd1-003 processed_transcript Mus_musculus 0 340

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