C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear RNA activating complex, polypeptide 3, 50kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164975 SNAPC3 9606 + 9:15422704-15465953 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000380799 SNAPC3-005 15447112-15453577 protein_coding
  ENST00000380821 SNAPC3-002 15422704-15464134 protein_coding
  ENST00000421710 SNAPC3-006 15422879-15453104 protein_coding
  ENST00000461041 SNAPC3-004 15423142-15433824 processed_transcript
  ENST00000467062 SNAPC3-001 15422734-15465953 nonsense_mediated_decay
  ENST00000490969 SNAPC3-003 15422869-15462460 nonsense_mediated_decay
  ENST00000610884 SNAPC3-201 15422734-15465832 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000380821ENST00000467062ENST00000490969ENST00000610884
Transcript ID Adipose Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000380821 1.937±0.00 2.957±0.00 2.279±0.25 1.933±0.87 N/A 4.670±0.00 2.486±0.17 1.081±0.47 3.441±0.48 1.227±0.00 N/A
ENST00000467062 N/A 7.162±0.00 3.920±0.00 N/A N/A N/A N/A N/A N/A N/A 29.579±0.00
ENST00000490969 N/A N/A 4.540±0.35 3.623±0.60 3.078±2.00 2.844±0.00 5.981±0.00 N/A 8.163±1.42 4.245±0.74 N/A
ENST00000610884 N/A N/A N/A N/A N/A N/A N/A 1.666±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000147 CIL_000147_0001 CGP 9:15163622-15465953
CIL_0005UX CIL_0005UX_0002 CGP 9:15422704-15511019

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006383 TAS transcription from RNA polymerase III promoter
GO:0009301 TAS snRNA transcription
GO:0010467 TAS gene expression

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071237 snapc3 small nuclear RNA activating complex, polypeptide 3 protein_coding Danio_rerio
ENSMUSG00000028483 Snapc3 small nuclear RNA activating complex, polypeptide 3 protein_coding Mus_musculus

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