C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear RNA activating complex, polypeptide 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028483 Snapc3 10090 + 4:83417724-83467676 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030206 Snapc3-006 83417724-83453340 protein_coding
  ENSMUST00000071544 Snapc3-003 83417731-83442086 protein_coding
  ENSMUST00000123262 Snapc3-005 83417724-83461846 nonsense_mediated_decay
  ENSMUST00000124856 Snapc3-004 83417744-83467219 nonsense_mediated_decay
  ENSMUST00000130676 Snapc3-007 83463976-83467211 retained_intron
  ENSMUST00000137512 Snapc3-002 83417744-83454033 nonsense_mediated_decay
  ENSMUST00000143533 Snapc3-001 83417749-83467676 nonsense_mediated_decay
  ENSMUST00000159518 Snapc3-009 83453806-83467166 processed_transcript
  ENSMUST00000160742 Snapc3-008 83453954-83466127 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleENSMUST00000030206ENSMUST00000071544ENSMUST00000143533
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle
ENSMUST00000030206 7.687±1.28 N/A 6.991±0.79 N/A 6.939±1.27 3.643±0.29 2.746±0.33 7.304±1.91 3.140±0.61
ENSMUST00000071544 N/A 25.659±4.15 23.135±0.00 11.428±1.98 N/A N/A N/A N/A N/A
ENSMUST00000143533 N/A N/A 3.337±0.07 N/A N/A 1.997±0.00 N/A 3.644±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000147 CIL_000147_0002 CGP 4:83220300-83467676
CIL_0005UX CIL_0005UX_0003 CGP 4:83417724-83486459

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071237 snapc3 small nuclear RNA activating complex, polypeptide 3 protein_coding Danio_rerio
ENSG00000164975 SNAPC3 small nuclear RNA activating complex, polypeptide 3, 50kDa protein_coding Homo_sapiens

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