C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005UX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000071237-ENSDARG00000018745 CGP 7955 1:27049293-27255466
GeneTranscriptPositionBiotype
ENSDARG00000018745 (psip1)
PC4 and SFRS1 interacting protein 1 		ENSDART00000123655 (psip1-001) 27149902-27255466 protein_coding
ENSDART00000154777 (psip1-201) 27071903-27255465 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0005UX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000164975-ENSG00000164985 CGP 9606 9:15422704-15511019
GeneTranscriptPositionBiotype
ENSG00000164985 (PSIP1)
PC4 and SFRS1 interacting protein 1 		ENST00000380715 (PSIP1-006) 15470636-15510991 protein_coding
ENST00000380716 (PSIP1-007) 15470636-15510994 protein_coding
ENST00000380733 (PSIP1-003) 15464066-15511019 protein_coding
ENST00000380738 (PSIP1-004) 15464066-15510995 protein_coding
ENST00000397519 (PSIP1-201) 15470646-15510289 protein_coding
ENST00000463712 (PSIP1-010) 15489270-15510946 processed_transcript
ENST00000481862 (PSIP1-005) 15470990-15472750 protein_coding
ENST00000484265 (PSIP1-008) 15504959-15510989 processed_transcript
ENST00000487363 (PSIP1-009) 15485903-15510289 processed_transcript
ENST00000488797 (PSIP1-001) 15491952-15510991 processed_transcript
ENST00000495873 (PSIP1-002) 15472081-15474201 processed_transcript

Homo sapiens Ensembl (GRCh38)

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CIL_0005UX_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028483-ENSMUSG00000028484 CGP 10090 4:83417724-83486459
GeneTranscriptPositionBiotype
ENSMUSG00000028483 (Snapc3)
small nuclear RNA activating complex, polypeptide 3 		ENSMUST00000030206 (Snapc3-006) 83417724-83453340 protein_coding
ENSMUST00000071544 (Snapc3-003) 83417731-83442086 protein_coding
ENSMUST00000123262 (Snapc3-005) 83417724-83461846 nonsense_mediated_decay
ENSMUST00000124856 (Snapc3-004) 83417744-83467219 nonsense_mediated_decay
ENSMUST00000130676 (Snapc3-007) 83463976-83467211 retained_intron
ENSMUST00000137512 (Snapc3-002) 83417744-83454033 nonsense_mediated_decay
ENSMUST00000143533 (Snapc3-001) 83417749-83467676 nonsense_mediated_decay
ENSMUST00000159518 (Snapc3-009) 83453806-83467166 processed_transcript
ENSMUST00000160742 (Snapc3-008) 83453954-83466127 processed_transcript
ENSMUSG00000028484 (Psip1)
PC4 and SFRS1 interacting protein 1 		ENSMUST00000030207 (Psip1-001) 83455680-83486459 protein_coding
ENSMUST00000107214 (Psip1-003) 83461871-83486453 protein_coding
ENSMUST00000107215 (Psip1-002) 83461871-83486458 protein_coding
ENSMUST00000126706 (Psip1-004) 83461871-83464964 protein_coding
ENSMUST00000130626 (Psip1-006) 83476298-83486178 protein_coding
ENSMUST00000144349 (Psip1-005) 83462830-83465043 retained_intron
ENSMUST00000152382 (Psip1-008) 83458075-83460292 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005UX_0001ENSDARG00000018745ENSDART00000123655ENSDART00000154777CIL_0005UX_0002ENSG00000164985ENST00000380715ENST00000380716ENST00000380733ENST00000380738ENST00000397519ENST00000463712ENST00000481862ENST00000484265ENST00000487363ENST00000488797ENST00000495873CIL_0005UX_0003ENSMUSG00000028483ENSMUST00000030206ENSMUST00000071544ENSMUST00000123262ENSMUST00000124856ENSMUST00000130676ENSMUST00000137512ENSMUST00000143533ENSMUST00000159518ENSMUST00000160742ENSMUSG00000028484ENSMUST00000030207ENSMUST00000107214ENSMUST00000107215ENSMUST00000126706ENSMUST00000130626ENSMUST00000144349ENSMUST00000152382
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005UX_0001ENSDARG00000018745ENSDART00000123655ENSDART00000154777CIL_0005UX_0002ENSG00000164985ENST00000380715ENST00000380733ENST00000380738ENST00000397519ENST00000495873CIL_0005UX_0003ENSMUSG00000028483ENSMUST00000030206ENSMUST00000071544ENSMUST00000143533ENSMUSG00000028484ENSMUST00000030207ENSMUST00000107214ENSMUST00000107215ENSMUST00000130626ENSMUST00000152382
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000018745 ENSDART00000123655 N/A N/A N/A 3.717±2.01 N/A N/A 2.205±0.71 2.415±0.91 N/A N/A N/A N/A N/A N/A
ENSDART00000154777 N/A N/A N/A 1.483±1.15 N/A N/A 0.905±0.00 1.016±0.03 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000164985 ENST00000380715 N/A N/A 1.927±0.00 9.498±0.00 N/A N/A N/A N/A N/A 2.503±0.00 N/A N/A N/A N/A
ENST00000380716 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000380733 3.134±0.00 N/A N/A 4.251±0.00 5.914±2.78 N/A 3.394±2.40 6.158±5.08 5.161±0.00 6.265±0.00 0.596±0.00 7.907±3.74 5.305±0.00 27.348±0.00
ENST00000380738 8.525±0.00 22.634±0.00 2.332±0.00 23.340±0.00 N/A 17.799±13.27 N/A N/A 2.332±0.00 4.647±1.65 6.192±0.00 14.314±8.83 12.770±7.29 38.832±0.00
ENST00000397519 N/A N/A N/A 28.162±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 38.917±0.00
ENST00000463712 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481862 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487363 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488797 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495873 N/A N/A N/A 12.866±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028483 ENSMUST00000030206 7.687±1.28 N/A N/A N/A 6.991±0.79 N/A 6.939±1.27 3.643±0.29 2.746±0.33 7.304±1.91 3.140±0.61 N/A N/A N/A
ENSMUST00000071544 N/A 25.659±4.15 N/A N/A 23.135±0.00 11.428±1.98 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000123262 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130676 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137512 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143533 N/A N/A N/A N/A 3.337±0.07 N/A N/A 1.997±0.00 N/A 3.644±0.00 N/A N/A N/A N/A
ENSMUST00000159518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160742 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000028484 ENSMUST00000030207 5.392±1.63 N/A 13.334±0.67 36.151±3.67 3.647±0.53 N/A 2.783±0.68 2.494±0.30 14.940±10.38 5.618±0.69 3.282±0.78 26.113±6.78 30.574±20.44 57.371±50.54
ENSMUST00000107214 12.949±0.00 35.046±20.16 N/A 41.348±1.02 32.073±0.00 20.516±9.63 3.279±0.68 N/A 8.370±4.24 7.888±2.09 1.605±0.44 99.370±32.70 12.359±0.00 N/A
ENSMUST00000107215 10.416±0.00 67.738±24.73 N/A 37.976±8.71 42.709±16.27 17.849±5.17 N/A 9.638±8.55 6.566±4.25 10.101±2.99 N/A 64.188±35.55 25.339±14.55 30.298±2.02
ENSMUST00000126706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130626 28.289±0.00 N/A N/A N/A 20.415±0.00 N/A N/A 6.043±0.00 N/A 7.767±0.00 N/A 56.139±22.51 N/A 37.086±0.00
ENSMUST00000144349 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152382 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 78.620±0.00 61.449±0.00 523.090±0.00

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