C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear RNA activating complex, polypeptide 3, 50kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000490969 SNAPC3-003 ENSG00000164975 9606 + 9:15422869-15462460 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartKidneyLiverLungOvaryPlacentaENST00000490969
Transcript ID Breast Heart Kidney Liver Lung Ovary Placenta
ENST00000490969 4.540±0.35 3.623±0.60 3.078±2.00 2.844±0.00 5.981±0.00 8.163±1.42 4.245±0.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000147 CIL_000147_0001 CGP 9:15163622-15465953
CIL_0005UX CIL_0005UX_0002 CGP 9:15422704-15511019

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006383 TAS transcription from RNA polymerase III promoter
GO:0009301 TAS snRNA transcription
GO:0010467 TAS gene expression

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030206 Snapc3-006 protein_coding Mus_musculus 0 1210
ENSMUST00000123262 Snapc3-005 nonsense_mediated_decay Mus_musculus 0 1210
ENSMUST00000124856 Snapc3-004 nonsense_mediated_decay Mus_musculus 0 1210
ENSMUST00000143533 Snapc3-001 nonsense_mediated_decay Mus_musculus 0 1210
ENSMUST00000137512 Snapc3-002 nonsense_mediated_decay Mus_musculus 0 968
ENSMUST00000071544 Snapc3-003 protein_coding Mus_musculus 0 640

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