C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: heterogeneous nuclear ribonucleoprotein K
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165119 HNRNPK 9606 - 9:83968083-83980616 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000351839 HNRNPK-012 83968197-83978452 protein_coding
  ENST00000360384 HNRNPK-002 83968909-83980250 protein_coding
  ENST00000376256 HNRNPK-006 83973292-83975770 retained_intron
  ENST00000376263 HNRNPK-201 83968084-83980269 protein_coding
  ENST00000376281 HNRNPK-011 83968083-83980604 protein_coding
  ENST00000457156 HNRNPK-005 83970313-83980190 protein_coding
  ENST00000472778 HNRNPK-008 83972844-83980616 nonsense_mediated_decay
  ENST00000481820 HNRNPK-010 83969496-83971294 protein_coding
  ENST00000483135 HNRNPK-004 83976508-83980595 retained_intron
  ENST00000492865 HNRNPK-009 83969416-83971146 retained_intron
  ENST00000493362 HNRNPK-007 83969198-83970786 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000351839ENST00000360384ENST00000376281ENST00000472778ENST00000492865
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000351839 N/A N/A N/A 22.981±0.00 N/A N/A N/A N/A N/A N/A N/A 22.321±5.85 N/A 18.617±0.00
ENST00000360384 86.840±0.00 87.110±0.00 18.265±0.00 50.729±14.41 57.707±9.84 67.384±31.26 33.389±12.49 63.463±20.48 50.227±10.08 71.897±32.02 39.732±21.46 99.671±68.07 142.201±35.38 108.480±10.07
ENST00000376281 30.610±0.00 59.665±0.00 13.987±0.00 30.713±9.78 26.894±1.70 29.325±11.76 21.359±9.36 32.735±13.94 25.446±4.28 40.753±15.83 12.805±5.68 43.520±15.32 64.759±7.18 45.059±16.48
ENST00000472778 N/A N/A N/A 31.224±0.00 N/A 38.996±0.00 N/A 39.870±0.00 N/A 42.765±0.00 15.151±0.00 N/A N/A N/A
ENST00000492865 N/A N/A 109.924±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00007C CIL_00007C_0002 CGP 9:83938311-83980616
CIL_00007B CIL_00007B_0002 CGP 9:83968083-84004074

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0000790 IDA nuclear chromatin
GO:0000978 IMP RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IMP RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003676 IEA nucleic acid binding
GO:0003697 TAS single-stranded DNA binding
GO:0003723 TAS:IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0005925 IDA focal adhesion
GO:0006351 IEA transcription, DNA-templated
GO:0006396 TAS RNA processing
GO:0007165 TAS signal transduction
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0010988 IMP regulation of low-density lipoprotein particle clearance
GO:0016020 IDA membrane
GO:0016032 IEA viral process
GO:0042995 IEA cell projection
GO:0044822 IDA poly(A) RNA binding
GO:0045716 IMP positive regulation of low-density lipoprotein particle receptor biosynthetic process
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0048260 IMP positive regulation of receptor-mediated endocytosis
GO:0070062 IDA extracellular vesicular exosome
GO:0071013 IDA catalytic step 2 spliceosome
GO:0072369 IMP regulation of lipid transport by positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007034 hnrpkl heterogeneous nuclear ribonucleoprotein K, like protein_coding Danio_rerio
ENSDARG00000018914 hnrnpk heterogeneous nuclear ribonucleoprotein K protein_coding Danio_rerio
ENSDARG00000078787 HNRNPK heterogeneous nuclear ribonucleoprotein K protein_coding Danio_rerio
ENSMUSG00000063902 Gm7964 predicted gene 7964 protein_coding Mus_musculus

Loading