C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin 19
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165194 PCDH19 9606 - X:100291644-100410273 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000255531 PCDH19-001 100291646-100408597 protein_coding
  ENST00000373034 PCDH19-002 100291644-100410273 protein_coding
  ENST00000420881 PCDH19-004 100291644-100408597 protein_coding
  ENST00000464981 PCDH19-003 100291647-100296300 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000255531ENST00000373034ENST00000420881ENST00000464981
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000255531 N/A 0.113±0.00 0.055±0.00 1.792±0.28 0.895±0.74 N/A 0.113±0.00 0.023±0.00 0.002±0.00 0.041±0.03 0.018±0.00 0.094±0.08 0.031±0.03 0.324±0.00
ENST00000373034 0.526±0.00 N/A N/A 0.935±0.25 0.211±0.17 N/A 0.044±0.02 N/A 0.180±0.00 N/A 0.055±0.00 0.073±0.00 N/A N/A
ENST00000420881 1.107±0.00 0.353±0.00 0.055±0.00 0.699±0.08 0.159±0.00 0.476±0.00 0.061±0.00 0.023±0.00 0.218±0.22 0.042±0.03 0.019±0.00 0.100±0.12 0.031±0.03 0.777±0.00
ENST00000464981 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.204±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000YN CIL_0000YN_0002 CGP X:100291644-100599885

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034344 pcdh19 protocadherin 19 protein_coding Danio_rerio
ENSMUSG00000051323 Pcdh19 protocadherin 19 protein_coding Mus_musculus

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