C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 19
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000420881 PCDH19-004 ENSG00000165194 9606 - X:100291644-100408597 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000420881
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000420881 1.107±0.00 0.353±0.00 0.055±0.00 0.699±0.08 0.159±0.00 0.476±0.00 0.061±0.00 0.023±0.00 0.218±0.22 0.042±0.03 0.019±0.00 0.100±0.12 0.031±0.03 0.777±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000YN CIL_0000YN_0002 CGP X:100291644-100599885

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167944 Pcdh19-201 protein_coding Mus_musculus 0 6065
ENSMUST00000060309 Pcdh19-002 protein_coding Mus_musculus 0 4466
ENSMUST00000149154 Pcdh19-001 protein_coding Mus_musculus 0 3524

Loading