C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin 19
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000051323 Pcdh19 10090 - X:133582863-133688993 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000060309 Pcdh19-002 133587610-133685893 protein_coding
  ENSMUST00000149154 Pcdh19-001 133582876-133688987 protein_coding
  ENSMUST00000167944 Pcdh19-201 133582863-133688993 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060309ENSMUST00000149154ENSMUST00000167944
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060309 1.168±0.27 0.948±0.00 N/A 2.624±0.00 1.877±0.74 0.306±0.07 0.670±0.17 0.190±0.04 0.020±0.00 N/A N/A 0.367±0.21 N/A 0.068±0.04
ENSMUST00000149154 N/A N/A 0.111±0.05 0.800±0.15 0.543±0.10 N/A N/A N/A N/A 0.611±0.00 0.089±0.00 0.177±0.00 0.085±0.03 N/A
ENSMUST00000167944 1.136±0.51 0.889±0.67 0.413±0.07 3.591±1.32 0.955±0.56 0.209±0.03 0.516±0.18 0.205±0.06 0.028±0.02 0.399±0.19 0.267±0.06 0.281±0.19 0.239±0.08 0.018±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000YN CIL_0000YN_0003 CGP X:133582863-133865577

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034344 pcdh19 protocadherin 19 protein_coding Danio_rerio
ENSG00000165194 PCDH19 protocadherin 19 protein_coding Homo_sapiens

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