C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 19
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000255531 PCDH19-001 ENSG00000165194 9606 - X:100291646-100408597 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000255531
Transcript ID Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000255531 0.113±0.00 0.055±0.00 1.792±0.28 0.895±0.74 0.113±0.00 0.023±0.00 0.002±0.00 0.041±0.03 0.018±0.00 0.094±0.08 0.031±0.03 0.324±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000YN CIL_0000YN_0002 CGP X:100291644-100599885

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167944 Pcdh19-201 protein_coding Mus_musculus 0 6056
ENSMUST00000060309 Pcdh19-002 protein_coding Mus_musculus 0 4481
ENSMUST00000149154 Pcdh19-001 protein_coding Mus_musculus 0 3539

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