C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spermatid perinuclear RNA binding protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165209 STRBP 9606 - 9:123109500-123268576 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000348403 STRBP-001 123124709-123268564 protein_coding
  ENST00000360998 STRBP-003 123125039-123268576 protein_coding
  ENST00000407982 STRBP-002 123125220-123268564 nonsense_mediated_decay
  ENST00000447404 STRBP-201 123121631-123184310 protein_coding
  ENST00000471564 STRBP-006 123109557-123132967 nonsense_mediated_decay
  ENST00000478973 STRBP-008 123109514-123132968 nonsense_mediated_decay
  ENST00000479114 STRBP-007 123179007-123213908 protein_coding
  ENST00000492885 STRBP-004 123135807-123136503 retained_intron
  ENST00000496533 STRBP-005 123121291-123136136 nonsense_mediated_decay
  ENST00000530364 STRBP-009 123109500-123122223 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000348403ENST00000360998ENST00000407982ENST00000447404ENST00000492885ENST00000496533
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000348403 1.525±0.00 3.664±0.00 N/A 4.850±0.00 2.236±0.00 5.221±0.00 1.421±0.00 5.778±0.00 1.767±0.00 1.732±0.00 0.542±0.00 3.417±0.28 1.685±0.06 17.214±6.72
ENST00000360998 0.666±0.00 N/A N/A N/A 0.795±0.01 2.599±0.00 N/A N/A N/A N/A N/A N/A 0.944±0.00 14.084±0.00
ENST00000407982 N/A N/A N/A 3.049±0.00 N/A 1.460±0.00 1.288±0.00 2.732±0.00 1.030±0.00 0.905±0.16 1.173±0.00 1.057±0.08 N/A 12.879±0.00
ENST00000447404 N/A N/A 0.604±0.00 N/A N/A N/A 0.286±0.00 N/A 0.430±0.00 1.939±0.00 N/A 0.755±0.00 N/A N/A
ENST00000492885 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.616±0.00 13.728±0.00 73.099±0.00
ENST00000496533 N/A N/A N/A N/A N/A N/A N/A 3.267±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003725 IEA double-stranded RNA binding
GO:0003727 IEA single-stranded RNA binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006928 IEA cellular component movement
GO:0007275 IEA multicellular organismal development
GO:0007286 IEA spermatid development
GO:0007638 IEA mechanosensory behavior
GO:0015630 IEA microtubule cytoskeleton
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021455 strbp spermatid perinuclear RNA binding protein protein_coding Danio_rerio
ENSMUSG00000026915 Strbp spermatid perinuclear RNA binding protein protein_coding Mus_musculus

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