C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spermatid perinuclear RNA binding protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026915 Strbp 10090 - 2:37483228-37703859 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028279 Strbp-201 37569868-37647285 protein_coding
  ENSMUST00000072186 Strbp-001 37583156-37703275 protein_coding
  ENSMUST00000135488 Strbp-002 37634928-37703348 processed_transcript
  ENSMUST00000144206 Strbp-004 37647120-37703149 processed_transcript
  ENSMUST00000145808 Strbp-006 37635457-37657910 protein_coding
  ENSMUST00000155237 Strbp-005 37640855-37703859 protein_coding
  ENSMUST00000183690 Strbp-003 37483228-37647219 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028279ENSMUST00000072186ENSMUST00000135488ENSMUST00000155237ENSMUST00000183690
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028279 1.204±0.18 1.153±0.00 5.147±3.03 1.004±0.00 1.239±0.47 0.364±0.02 1.969±0.00 0.749±0.19 1.811±0.00 0.689±0.15 2.227±0.81 0.618±0.00 1.622±0.44
ENSMUST00000072186 N/A 4.919±0.55 27.330±3.83 N/A 4.644±0.76 N/A 3.410±0.12 4.987±2.29 N/A 2.109±0.26 9.743±0.71 7.007±1.86 21.953±5.34
ENSMUST00000135488 N/A N/A N/A N/A 12.991±4.75 N/A N/A 4.902±0.00 N/A N/A 12.133±1.35 N/A 22.519±0.00
ENSMUST00000155237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 61.471±0.00
ENSMUST00000183690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.907±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006WQ CIL_0006WQ_0002 CGP 2:37432168-37566454

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003725 IDA double-stranded RNA binding
GO:0003727 IDA single-stranded RNA binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006928 IMP cellular component movement
GO:0007275 IEA multicellular organismal development
GO:0007286 IMP spermatid development
GO:0007638 IMP mechanosensory behavior
GO:0015630 IDA microtubule cytoskeleton
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021455 strbp spermatid perinuclear RNA binding protein protein_coding Danio_rerio
ENSG00000165209 STRBP spermatid perinuclear RNA binding protein protein_coding Homo_sapiens

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