C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000173_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000044387-ENSDARG00000054096 CGP 7955 21:36966135-36994394
GeneTranscriptPositionBiotype
ENSDARG00000044387 (cldn2)
claudin 2 		ENSDART00000065183 (cldn2-001) 36966135-36972763 protein_coding
ENSDARG00000054096 (rbm41)
RNA binding motif protein 41 		ENSDART00000076238 (rbm41-001) 36976333-36994394 protein_coding
CIL_000173_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000165376-ENSG00000089682 CGP 9606 X:106900164-107118823
GeneTranscriptPositionBiotype
ENSG00000089682 (RBM41)
RNA binding motif protein 41 		ENST00000372479 (RBM41-002) 107067138-107118804 protein_coding
ENST00000372487 (RBM41-001) 107064420-107118800 protein_coding
ENST00000434854 (RBM41-008) 107069310-107116766 protein_coding
ENST00000471079 (RBM41-004) 107114300-107116766 processed_transcript
ENST00000474499 (RBM41-007) 107066645-107069277 processed_transcript
ENST00000475556 (RBM41-006) 107088436-107115454 processed_transcript
ENST00000485676 (RBM41-005) 107088526-107116768 processed_transcript
ENST00000495517 (RBM41-003) 107066300-107118823 nonsense_mediated_decay
ENSG00000133131 (MORC4)
MORC family CW-type zinc finger 4 		ENST00000255495 (MORC4-003) 106941424-107000078 protein_coding
ENST00000355610 (MORC4-001) 106940734-107000244 protein_coding
ENST00000478924 (MORC4-002) 106941464-106942584 retained_intron
ENST00000604604 (MORC4-004) 106813871-106993340 protein_coding
ENSG00000147223 (RIPPLY1)
ripply transcriptional repressor 1 		ENST00000276173 (RIPPLY1-002) 106900063-106903317 protein_coding
ENST00000411805 (RIPPLY1-001) 106900326-106903335 protein_coding
ENSG00000165376 (CLDN2)
claudin 2 		ENST00000336803 (CLDN2-001) 106920404-106930861 protein_coding
ENST00000540876 (CLDN2-201) 106918360-106930859 protein_coding
ENST00000541806 (CLDN2-202) 106900164-106930859 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000173_0001ENSDARG00000044387ENSDART00000065183ENSDARG00000054096ENSDART00000076238CIL_000173_0002ENSG00000089682ENST00000372479ENST00000372487ENST00000434854ENST00000471079ENST00000474499ENST00000475556ENST00000485676ENST00000495517ENSG00000133131ENST00000255495ENST00000355610ENST00000478924ENST00000604604ENSG00000147223ENST00000276173ENST00000411805ENSG00000165376ENST00000336803ENST00000540876ENST00000541806
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000173_0001ENSDARG00000044387ENSDART00000065183ENSDARG00000054096ENSDART00000076238CIL_000173_0002ENSG00000089682ENST00000372479ENST00000372487ENST00000471079ENST00000495517ENSG00000133131ENST00000255495ENST00000355610ENST00000478924ENST00000604604ENSG00000147223ENST00000276173ENST00000411805ENSG00000165376ENST00000336803ENST00000540876ENST00000541806
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000044387 ENSDART00000065183 N/A N/A N/A 0.285±0.12 N/A N/A 0.648±0.48 5.842±2.50 3.833±0.00 N/A 0.287±0.00 N/A N/A N/A
ENSDARG00000054096 ENSDART00000076238 N/A N/A N/A 2.101±1.26 N/A N/A 3.655±2.08 3.045±1.96 0.514±0.00 N/A 1.001±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000089682 ENST00000372479 N/A 0.458±0.00 N/A 0.453±0.00 0.870±0.35 N/A N/A 1.177±0.00 1.070±0.29 0.626±0.00 N/A 0.384±0.00 0.291±0.15 N/A
ENST00000372487 0.351±0.00 N/A N/A 0.519±0.00 0.618±0.00 1.381±0.00 0.662±0.00 N/A 0.359±0.00 0.684±0.00 N/A 0.418±0.12 0.393±0.00 0.615±0.00
ENST00000434854 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471079 N/A N/A N/A N/A N/A N/A 0.573±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000474499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475556 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485676 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495517 N/A N/A N/A N/A N/A 0.490±0.00 N/A N/A N/A N/A N/A 1.328±1.16 0.094±0.00 N/A
ENSG00000133131 ENST00000255495 1.008±0.00 N/A N/A N/A N/A 1.010±0.00 N/A N/A N/A N/A N/A 2.303±0.91 15.402±9.67 2.403±0.00
ENST00000355610 1.283±0.00 0.604±0.00 0.492±0.00 0.395±0.01 2.819±0.53 2.860±0.00 0.448±0.00 2.420±0.00 1.677±0.62 2.018±0.50 3.600±0.00 4.385±3.32 34.361±3.62 8.300±2.13
ENST00000478924 N/A N/A N/A 0.969±0.00 N/A N/A N/A N/A N/A N/A N/A 7.595±0.00 68.211±0.00 12.474±0.00
ENST00000604604 N/A 1.216±0.00 0.963±0.00 0.761±0.08 2.616±0.00 1.157±0.00 0.752±0.13 0.806±0.00 1.893±0.00 1.656±0.00 0.271±0.00 1.574±0.08 N/A 2.612±0.00
ENSG00000147223 ENST00000276173 N/A N/A N/A N/A N/A 0.032±0.00 N/A N/A N/A N/A N/A N/A 0.047±0.00 0.097±0.00
ENST00000411805 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.620±0.00 0.125±0.00 N/A 0.061±0.02 0.234±0.00
ENSG00000165376 ENST00000336803 N/A 0.042±0.00 N/A 0.303±0.04 0.348±0.22 N/A N/A 1.856±0.00 1.124±0.71 N/A 0.002±0.00 0.253±0.17 N/A N/A
ENST00000540876 0.175±0.00 0.088±0.00 9.900±0.00 N/A N/A 0.016±0.00 0.022±0.00 40.203±0.00 8.878±0.00 0.119±0.00 0.015±0.00 0.254±0.00 0.017±0.00 1.615±0.00
ENST00000541806 N/A N/A N/A N/A 0.163±0.00 N/A N/A 1.218±0.00 2.768±0.00 N/A N/A 0.267±0.00 0.077±0.00 0.069±0.00

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