C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: claudin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000540876 CLDN2-201 ENSG00000165376 9606 + X:106918360-106930859 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000540876
Transcript ID Adipose Adrenal Bladder Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000540876 0.175±0.00 0.088±0.00 9.900±0.00 0.016±0.00 0.022±0.00 40.203±0.00 8.878±0.00 0.119±0.00 0.015±0.00 0.254±0.00 0.017±0.00 1.615±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000174 CIL_000174_0002 CGP X:106900063-106930861
CIL_000173 CIL_000173_0002 CGP X:106900164-107118823

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005886 IEA plasma membrane
GO:0005923 ISS tight junction
GO:0016021 IEA integral component of membrane
GO:0016338 ISS calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules
GO:0042802 ISS identical protein binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000054889 Cldn2-001 protein_coding Mus_musculus 0 1061
ENSMUST00000135224 Cldn2-002 protein_coding Mus_musculus 0 649

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