C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: pre-mRNA processing factor 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000417658 PRPF18-003 ENSG00000165630 9606 + 10:13586939-13614060 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENST00000417658
Transcript ID Muscle
ENST00000417658 3.269±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000968 CIL_000968_0001 VISTA 10:13045564-13647145
CIL_000965 CIL_000965_0001 VISTA 10:13372414-13973663
CIL_000966 CIL_000966_0001 VISTA 10:13410200-14012149
CIL_00045D CIL_00045D_0002 CGP 10:13438484-13630868

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005681 IEA spliceosomal complex
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000152362 Prpf18-002 protein_coding Mus_musculus 0 789
ENSMUST00000035721 Prpf18-001 protein_coding Mus_musculus 0 789
ENSMUST00000153881 Prpf18-003 processed_transcript Mus_musculus 0 359
ENSMUST00000144650 Prpf18-004 processed_transcript Mus_musculus 4e-22 110
ENSMUST00000140818 Prpf18-005 processed_transcript Mus_musculus 4e-22 110

Loading