C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pre-mRNA processing factor 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000378572 PRPF18-001 ENSG00000165630 9606 + 10:13586927-13630868 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000378572
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000378572 10.231±0.00 9.917±0.00 10.904±0.00 7.008±3.16 4.950±0.95 7.816±4.47 7.476±1.91 4.726±0.00 3.718±0.00 11.051±3.80 9.711±4.27 20.704±4.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000968 CIL_000968_0001 VISTA 10:13045564-13647145
CIL_000965 CIL_000965_0001 VISTA 10:13372414-13973663
CIL_000966 CIL_000966_0001 VISTA 10:13410200-14012149
CIL_00045D CIL_00045D_0002 CGP 10:13438484-13630868

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 TAS nucleus
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0019870 IEA potassium channel inhibitor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000152362 Prpf18-002 protein_coding Mus_musculus 0 1351
ENSMUST00000035721 Prpf18-001 protein_coding Mus_musculus 0 1351
ENSMUST00000153881 Prpf18-003 processed_transcript Mus_musculus 0 721
ENSMUST00000140818 Prpf18-005 processed_transcript Mus_musculus 0 442
ENSMUST00000144650 Prpf18-004 processed_transcript Mus_musculus 0 209

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