C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TruB pseudouridine (psi) synthase family member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000298746 TRUB1-001 ENSG00000165832 9606 + 10:114938193-114977676 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000298746
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000298746 1.317±0.00 2.673±0.00 1.560±0.00 7.686±1.77 2.386±0.86 2.342±0.38 3.100±0.17 3.765±1.50 2.705±0.56 1.698±0.74 1.169±0.00 4.945±0.99 1.737±0.16 8.041±1.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00019G CIL_00019G_0001 CGP 10:114821744-114977676
CIL_0002OD CIL_0002OD_0001 CGP 10:114938193-115948992

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001522 IEA pseudouridine synthesis
GO:0003723 IEA RNA binding
GO:0006396 IEA RNA processing
GO:0008033 IEA tRNA processing
GO:0009451 IEA RNA modification
GO:0009982 IEA pseudouridine synthase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026073 Trub1-202 protein_coding Mus_musculus 0 800
ENSMUST00000026072 Trub1-201 protein_coding Mus_musculus 0 599

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