C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SV2 related protein homolog (rat)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166111 SVOP 9606 - 12:108907741-109021240 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000546618 SVOP-003 108960935-109021040 protein_coding
  ENST00000548229 SVOP-002 108978424-109021029 retained_intron
  ENST00000550436 SVOP-004 108940827-109021023 nonsense_mediated_decay
  ENST00000551211 SVOP-005 108936961-108938888 retained_intron
  ENST00000610966 SVOP-001 108907741-109021240 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000610966
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000610966 0.051±0.00 0.164±0.00 0.098±0.00 4.875±3.03 0.082±0.01 0.087±0.07 0.172±0.00 0.067±0.00 0.032±0.02 0.054±0.00 0.045±0.00 0.013±0.00 0.028±0.00 0.171±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VS CIL_0001VS_0001 CGP 12:108858932-109021240
CIL_0001VR CIL_0001VR_0001 CGP 12:108907741-109088026

Gene Ontology
GO IDEvidence TypeGO Description
GO:0008021 ISS synaptic vesicle
GO:0015075 IEA ion transmembrane transporter activity
GO:0016021 IEA integral component of membrane
GO:0022857 IEA transmembrane transporter activity
GO:0030054 IEA cell junction
GO:0034220 IEA ion transmembrane transport
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056833 svopa SV2 related protein homolog a (rat) protein_coding Danio_rerio
ENSMUSG00000042078 Svop SV2 related protein protein_coding Mus_musculus

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