C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SV2 related protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000042078 Svop 10090 - 5:114026910-114091570 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000058472 Svop-001 114026910-114091570 protein_coding
  ENSMUST00000134790 Svop-003 114028125-114065218 processed_transcript
  ENSMUST00000140151 Svop-002 114053767-114091380 retained_intron
  ENSMUST00000149480 Svop-005 114034951-114042881 retained_intron
  ENSMUST00000150106 Svop-004 114054534-114091367 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000058472ENSMUST00000134790ENSMUST00000140151ENSMUST00000149480ENSMUST00000150106
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000058472 0.009±0.00 0.718±0.27 0.010±0.00 22.443±7.49 0.013±0.00 0.183±0.07 0.017±0.00 0.157±0.07 0.032±0.05 0.013±0.00 0.020±0.00 0.073±0.05 0.089±0.04 N/A
ENSMUST00000134790 N/A 0.290±0.00 0.036±0.02 N/A 0.048±0.00 0.262±0.11 0.046±0.01 0.183±0.01 0.023±0.00 0.004±0.00 N/A 0.062±0.05 0.022±0.00 4.335±0.28
ENSMUST00000140151 N/A N/A N/A N/A N/A N/A 0.066±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149480 N/A N/A N/A N/A 0.129±0.00 N/A N/A N/A 0.010±0.00 N/A N/A 0.088±0.00 N/A N/A
ENSMUST00000150106 N/A N/A 0.030±0.00 N/A N/A 0.226±0.00 0.078±0.00 N/A N/A N/A N/A 0.065±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VS CIL_0001VS_0002 CGP 5:114003703-114091570
CIL_0001VR CIL_0001VR_0002 CGP 5:114026910-114123506

Gene Ontology
GO IDEvidence TypeGO Description
GO:0008021 ISS synaptic vesicle
GO:0015075 IEA ion transmembrane transporter activity
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0034220 IEA ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056833 svopa SV2 related protein homolog a (rat) protein_coding Danio_rerio
ENSG00000166111 SVOP SV2 related protein homolog (rat) protein_coding Homo_sapiens

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