C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001VR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000166111-ENSG00000135093 CGP 9606 12:108907741-109088026
GeneTranscriptPositionBiotype
ENSG00000135093 (USP30)
ubiquitin specific peptidase 30 		ENST00000257548 (USP30-001) 109052586-109088026 protein_coding
ENST00000377883 (USP30-004) 109052604-109082917 nonsense_mediated_decay
ENST00000392784 (USP30-002) 109023089-109086377 protein_coding
ENST00000467307 (USP30-007) 109067594-109081628 retained_intron
ENST00000470117 (USP30-006) 109085063-109086324 nonsense_mediated_decay
ENST00000479219 (USP30-003) 109082536-109088023 retained_intron
ENST00000491362 (USP30-005) 109082695-109085922 retained_intron
ENST00000536393 (USP30-008) 109052642-109072347 protein_coding
ENST00000536723 (USP30-010) 109052591-109072350 protein_coding
ENST00000539121 (USP30-009) 109052896-109058096 protein_coding
ENSG00000201324 (RNU6-361P)
RNA, U6 small nuclear 361, pseudogene 		ENST00000364454 (RNU6-361P-201) 108926435-108926541 snRNA
ENSG00000212138 (RNA5SP372)
RNA, 5S ribosomal pseudogene 372 		ENST00000390836 (RNA5SP372-201) 109059986-109060100 rRNA
CIL_0001VR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000042078-ENSMUSG00000029592 CGP 10090 5:114026910-114123506
GeneTranscriptPositionBiotype
ENSMUSG00000029592 (Usp30)
ubiquitin specific peptidase 30 		ENSMUST00000031588 (Usp30-001) 114100333-114123506 protein_coding
ENSMUSG00000042078 (Svop)
SV2 related protein 		ENSMUST00000058472 (Svop-001) 114026910-114091570 protein_coding
ENSMUST00000134790 (Svop-003) 114028125-114065218 processed_transcript
ENSMUST00000140151 (Svop-002) 114053767-114091380 retained_intron
ENSMUST00000149480 (Svop-005) 114034951-114042881 retained_intron
ENSMUST00000150106 (Svop-004) 114054534-114091367 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001VR_0001ENSG00000135093ENST00000257548ENST00000377883ENST00000392784ENST00000467307ENST00000470117ENST00000479219ENST00000491362ENST00000536393ENST00000536723ENST00000539121ENSG00000201324ENST00000364454ENSG00000212138ENST00000390836CIL_0001VR_0002ENSMUSG00000029592ENSMUST00000031588ENSMUSG00000042078ENSMUST00000058472ENSMUST00000134790ENSMUST00000140151ENSMUST00000149480ENSMUST00000150106
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001VR_0001ENSG00000135093ENST00000257548ENST00000377883ENST00000392784ENST00000467307ENST00000479219ENSG00000201324ENST00000364454ENSG00000212138ENST00000390836CIL_0001VR_0002ENSMUSG00000029592ENSMUST00000031588ENSMUSG00000042078ENSMUST00000058472ENSMUST00000134790ENSMUST00000140151ENSMUST00000149480ENSMUST00000150106
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000135093 ENST00000257548 3.831±0.00 0.827±0.00 N/A 4.640±2.58 2.114±1.59 1.143±0.13 1.640±0.63 3.363±0.20 1.426±0.59 0.749±0.17 2.270±1.74 2.767±2.12 2.242±0.36 3.352±0.02
ENST00000377883 N/A N/A N/A 2.019±0.00 1.052±0.00 N/A N/A N/A N/A N/A N/A 3.178±0.00 1.675±0.00 10.982±0.00
ENST00000392784 N/A 0.648±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.709±0.00
ENST00000467307 N/A N/A N/A N/A N/A N/A N/A N/A 3.951±0.00 N/A N/A N/A N/A N/A
ENST00000470117 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479219 N/A 1.312±0.00 1.123±0.00 N/A 0.466±0.00 0.350±0.03 0.711±0.00 1.525±0.00 1.145±0.47 1.042±0.33 N/A 0.746±0.35 N/A N/A
ENST00000491362 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539121 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000201324 ENST00000364454 N/A N/A N/A 0.780±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000212138 ENST00000390836 N/A N/A N/A N/A N/A N/A 0.468±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029592 ENSMUST00000031588 9.224±0.77 18.505±1.24 5.967±2.70 11.058±3.28 8.898±1.64 7.868±0.74 3.793±0.61 10.699±0.96 5.010±2.07 8.904±0.28 2.088±0.46 12.927±3.74 6.068±1.90 7.447±4.45
ENSMUSG00000042078 ENSMUST00000058472 0.009±0.00 0.718±0.27 0.010±0.00 22.443±7.49 0.013±0.00 0.183±0.07 0.017±0.00 0.157±0.07 0.032±0.05 0.013±0.00 0.020±0.00 0.073±0.05 0.089±0.04 N/A
ENSMUST00000134790 N/A 0.290±0.00 0.036±0.02 N/A 0.048±0.00 0.262±0.11 0.046±0.01 0.183±0.01 0.023±0.00 0.004±0.00 N/A 0.062±0.05 0.022±0.00 4.335±0.28
ENSMUST00000140151 N/A N/A N/A N/A N/A N/A 0.066±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149480 N/A N/A N/A N/A 0.129±0.00 N/A N/A N/A 0.010±0.00 N/A N/A 0.088±0.00 N/A N/A
ENSMUST00000150106 N/A N/A 0.030±0.00 N/A N/A 0.226±0.00 0.078±0.00 N/A N/A N/A N/A 0.065±0.00 N/A N/A

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