C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166337 TAF10 9606 - 11:6606296-6612667 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000299424 TAF10-001 6610842-6612667 protein_coding
  ENST00000527248 TAF10-004 6610845-6612141 protein_coding
  ENST00000531760 TAF10-005 6611188-6612539 processed_transcript
  ENST00000532344 TAF10-003 6611401-6612177 retained_intron
  ENST00000616342 TAF10-002 6606296-6611948 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000299424ENST00000527248ENST00000531760ENST00000616342
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000299424 N/A N/A N/A N/A N/A 4.327±0.00 15.705±0.00 4.023±0.00 5.222±0.00 57.223±0.00 N/A
ENST00000527248 N/A 15.738±0.00 N/A N/A N/A N/A 41.312±0.00 N/A 78.783±0.00 N/A N/A
ENST00000531760 N/A N/A N/A N/A N/A N/A 57.797±0.00 N/A N/A 256.346±0.00 132.478±0.00
ENST00000616342 6.158±0.00 3.219±1.78 14.900±0.00 30.991±0.00 12.394±0.00 9.813±0.00 3.680±0.00 12.503±0.00 N/A 8.700±6.49 9.447±5.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001HZ CIL_0001HZ_0001 CGP 11:6595075-6610874
CIL_0003X8 CIL_0003X8_0001 CGP 11:6603708-6612667
CIL_0003WX CIL_0003WX_0001 CGP 11:6606296-6619461

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000125 IDA PCAF complex
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003713 IDA transcription coactivator activity
GO:0004402 IDA histone acetyltransferase activity
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005669 IDA transcription factor TFIID complex
GO:0005737 IDA cytoplasm
GO:0006325 TAS chromatin organization
GO:0006352 IDA:IEA DNA-templated transcription, initiation
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IC transcription from RNA polymerase II promoter
GO:0006367 IC transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016578 IDA histone deubiquitination
GO:0019899 IPI enzyme binding
GO:0030331 IDA estrogen receptor binding
GO:0030914 IDA STAGA complex
GO:0033276 IDA transcription factor TFTC complex
GO:0043966 IDA histone H3 acetylation
GO:0048471 IDA perinuclear region of cytoplasm
GO:0051260 IDA protein homooligomerization
GO:0070063 IDA RNA polymerase binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068641 taf10 TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor protein_coding Danio_rerio
ENSMUSG00000043866 Taf10 TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor protein_coding Mus_musculus
ENSMUSG00000071151 Gm4799 predicted gene 4799 protein_coding Mus_musculus

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