C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000299424 TAF10-001 ENSG00000166337 9606 - 11:6610842-6612667 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLiverLungMuscleOvaryENST00000299424
Transcript ID Kidney Liver Lung Muscle Ovary
ENST00000299424 4.327±0.00 15.705±0.00 4.023±0.00 5.222±0.00 57.223±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001HZ CIL_0001HZ_0001 CGP 11:6595075-6610874
CIL_0003X8 CIL_0003X8_0001 CGP 11:6603708-6612667
CIL_0003WX CIL_0003WX_0001 CGP 11:6606296-6619461

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000125 IDA PCAF complex
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003713 IDA transcription coactivator activity
GO:0004402 IDA histone acetyltransferase activity
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005669 IDA transcription factor TFIID complex
GO:0005737 IDA cytoplasm
GO:0006325 TAS chromatin organization
GO:0006352 IDA:IEA DNA-templated transcription, initiation
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IC transcription from RNA polymerase II promoter
GO:0006367 IC transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016578 IDA histone deubiquitination
GO:0019899 IPI enzyme binding
GO:0030331 IDA estrogen receptor binding
GO:0030914 IDA STAGA complex
GO:0033276 IDA transcription factor TFTC complex
GO:0043966 IDA histone H3 acetylation
GO:0048471 IDA perinuclear region of cytoplasm
GO:0051260 IDA protein homooligomerization
GO:0070063 IDA RNA polymerase binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000141116 Taf10-001 protein_coding Mus_musculus 0 1042
ENSMUST00000095396 Gm4799-201 protein_coding Mus_musculus 0 787
ENSMUST00000131683 Taf10-003 retained_intron Mus_musculus 0 732
ENSMUST00000054556 Taf10-002 retained_intron Mus_musculus 0 564
ENSMUST00000146999 Taf10-004 retained_intron Mus_musculus 0 527
ENSMUST00000163389 Ilk-201 protein_coding Mus_musculus 0.0000005 60
ENSMUST00000033182 Ilk-001 protein_coding Mus_musculus 0.0000005 60

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