C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000616342 TAF10-002 ENSG00000166337 9606 - 11:6606296-6611948 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungOvaryTestisENST00000616342
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Testis
ENST00000616342 6.158±0.00 3.219±1.78 14.900±0.00 30.991±0.00 12.394±0.00 9.813±0.00 3.680±0.00 12.503±0.00 8.700±6.49 9.447±5.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001HZ CIL_0001HZ_0001 CGP 11:6595075-6610874
CIL_0003X8 CIL_0003X8_0001 CGP 11:6603708-6612667
CIL_0003WX CIL_0003WX_0001 CGP 11:6606296-6619461

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000141116 Taf10-001 protein_coding Mus_musculus 0 2455
ENSMUST00000149695 Ilk-002 retained_intron Mus_musculus 0 549
ENSMUST00000131683 Taf10-003 retained_intron Mus_musculus 0 545
ENSMUST00000146999 Taf10-004 retained_intron Mus_musculus 0 544
ENSMUST00000163389 Ilk-201 protein_coding Mus_musculus 0 521
ENSMUST00000033182 Ilk-001 protein_coding Mus_musculus 0 521
ENSMUST00000095396 Gm4799-201 protein_coding Mus_musculus 0 440
ENSMUST00000151108 Ilk-009 retained_intron Mus_musculus 0 411
ENSMUST00000148971 Ilk-007 retained_intron Mus_musculus 0 327
ENSMUST00000130565 Ilk-012 retained_intron Mus_musculus 0 326
ENSMUST00000152508 Ilk-011 retained_intron Mus_musculus 0 322
ENSMUST00000153557 Ilk-003 retained_intron Mus_musculus 0 272
ENSMUST00000154626 Ilk-005 retained_intron Mus_musculus 0 243
ENSMUST00000138150 Ilk-010 processed_transcript Mus_musculus 0 239
ENSMUST00000145123 Ilk-006 retained_intron Mus_musculus 0 233
ENSMUST00000136687 Ilk-004 protein_coding Mus_musculus 0 231
ENSMUST00000120029 Gm6263-001 processed_pseudogene Mus_musculus 0 213
ENSMUST00000127298 Ilk-008 protein_coding Mus_musculus 7.00005e-41 174
ENSMUST00000054556 Taf10-002 retained_intron Mus_musculus 8.99999e-40 171

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