C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000043866 Taf10 10090 - 7:105739393-105744361 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000054556 Taf10-002 105743237-105744342 retained_intron
  ENSMUST00000131683 Taf10-003 105742896-105744082 retained_intron
  ENSMUST00000141116 Taf10-001 105739393-105744361 protein_coding
  ENSMUST00000146999 Taf10-004 105742906-105743610 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000054556ENSMUST00000131683ENSMUST00000141116
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000054556 N/A 329.831±85.78 N/A N/A 170.463±69.70 158.792±24.93 N/A 61.044±15.68 60.282±10.38 69.668±25.40 N/A 184.993±17.85 N/A 56.206±3.56
ENSMUST00000131683 111.695±5.08 N/A N/A 67.632±20.12 102.126±7.54 73.325±11.71 45.366±5.04 125.243±20.47 92.650±44.36 56.000±2.69 29.903±2.95 N/A 129.680±10.84 156.806±63.23
ENSMUST00000141116 40.803±9.62 31.281±4.14 19.366±0.00 9.990±3.86 23.795±12.10 23.447±4.25 7.511±2.85 18.971±0.75 10.194±1.49 23.505±7.40 5.080±0.73 36.587±11.56 17.562±7.26 9.430±0.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001HZ CIL_0001HZ_0002 CGP 7:105732207-105742925
CIL_0003X8 CIL_0003X8_0002 CGP 7:105736592-105744361
CIL_0003WX CIL_0003WX_0002 CGP 7:105739393-105752207

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000082 IMP G1/S transition of mitotic cell cycle
GO:0001889 IMP liver development
GO:0003677 IDA DNA binding
GO:0005634 IDA nucleus
GO:0005669 TAS transcription factor TFIID complex
GO:0006352 IEA DNA-templated transcription, initiation
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006915 IMP apoptotic process
GO:0010468 IMP regulation of gene expression
GO:0035264 IMP multicellular organism growth
GO:0043623 IMP cellular protein complex assembly
GO:0051101 IMP regulation of DNA binding
GO:0070365 IMP hepatocyte differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068641 taf10 TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor protein_coding Danio_rerio
ENSG00000166337 TAF10 TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa protein_coding Homo_sapiens

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