C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PTPRF interacting protein, binding protein 2 (liprin beta 2)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166387 PPFIBP2 9606 + 11:7513298-7657127 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000299492 PPFIBP2-001 7513770-7653756 protein_coding
  ENST00000524495 PPFIBP2-027 7642379-7650896 processed_transcript
  ENST00000524548 PPFIBP2-029 7565625-7598303 protein_coding
  ENST00000525597 PPFIBP2-017 7577040-7625799 protein_coding
  ENST00000526046 PPFIBP2-014 7539178-7565698 protein_coding
  ENST00000526873 PPFIBP2-011 7513298-7565756 protein_coding
  ENST00000527790 PPFIBP2-013 7538277-7610316 protein_coding
  ENST00000528883 PPFIBP2-007 7597186-7653351 protein_coding
  ENST00000528929 PPFIBP2-026 7649210-7650998 retained_intron
  ENST00000528947 PPFIBP2-012 7513768-7565756 protein_coding
  ENST00000529021 PPFIBP2-016 7577117-7656977 processed_transcript
  ENST00000529321 PPFIBP2-018 7597237-7598481 retained_intron
  ENST00000529575 PPFIBP2-015 7573905-7629511 protein_coding
  ENST00000529664 PPFIBP2-010 7650749-7653768 retained_intron
  ENST00000530081 PPFIBP2-023 7632867-7642342 protein_coding
  ENST00000530181 PPFIBP2-008 7605738-7653760 protein_coding
  ENST00000530189 PPFIBP2-019 7597587-7610523 retained_intron
  ENST00000530582 PPFIBP2-009 7630999-7657127 processed_transcript
  ENST00000532112 PPFIBP2-025 7648108-7649172 retained_intron
  ENST00000532172 PPFIBP2-024 7639732-7642156 retained_intron
  ENST00000532381 PPFIBP2-021 7632346-7639811 retained_intron
  ENST00000532416 PPFIBP2-020 7625811-7631243 retained_intron
  ENST00000532926 PPFIBP2-004 7576767-7653753 processed_transcript
  ENST00000533792 PPFIBP2-003 7576408-7653760 protein_coding
  ENST00000534409 PPFIBP2-022 7630923-7642382 protein_coding
  ENST00000534552 PPFIBP2-028 7651715-7653756 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000299492ENST00000528883ENST00000529575ENST00000529664ENST00000530181ENST00000530582ENST00000532926ENST00000533792ENST00000534552
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000299492 1.553±0.00 2.401±0.00 0.761±0.00 2.604±2.02 2.130±0.26 N/A 0.157±0.00 3.401±0.00 3.658±0.00 1.474±0.30 1.315±0.00 2.009±0.00 1.600±0.00 7.045±1.24
ENST00000528883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.519±0.00 N/A N/A
ENST00000529575 N/A N/A N/A N/A N/A N/A N/A 7.974±0.00 N/A N/A N/A 6.077±0.00 N/A N/A
ENST00000529664 N/A N/A 1.783±0.00 N/A N/A 2.771±0.00 N/A N/A N/A 1.342±0.00 N/A N/A N/A N/A
ENST00000530181 N/A N/A 1.371±0.00 N/A N/A 2.247±1.22 0.167±0.00 6.237±0.00 3.985±0.00 N/A N/A 6.512±5.25 5.721±3.17 6.430±3.35
ENST00000530582 N/A N/A N/A 0.316±0.00 N/A N/A N/A N/A N/A N/A 3.436±0.00 2.403±0.00 N/A N/A
ENST00000532926 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.637±0.00 N/A N/A N/A N/A
ENST00000533792 2.555±0.00 1.513±0.00 N/A N/A 4.089±0.00 1.379±0.00 N/A 2.770±0.00 1.850±0.00 1.750±0.00 N/A 3.601±0.00 4.948±0.85 N/A
ENST00000534552 N/A N/A N/A N/A N/A 3.843±0.00 N/A N/A 7.147±0.00 N/A N/A 9.331±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000D4 CIL_0000D4_0002 CGP 11:7485388-7657127
CIL_0000DI CIL_0000DI_0002 CGP 11:7513298-7677222

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005615 IDA extracellular space
GO:0005622 TAS intracellular
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0008907 IEA integrase activity
GO:0015074 IEA DNA integration
GO:0048786 IEA presynaptic active zone

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029168 ppfibp2b protein tyrosine phosphatase, receptor-type, F interacting protein, binding protein 2b protein_coding Danio_rerio
ENSDARG00000061977 ppfibp2a protein tyrosine phosphatase, receptor-type, F interacting protein, binding protein 2a protein_coding Danio_rerio
ENSMUSG00000036528 Ppfibp2 PTPRF interacting protein, binding protein 2 (liprin beta 2) protein_coding Mus_musculus

Loading