C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tubby bipartite transcription factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166402 TUB 9606 + 11:8019244-8106112 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000299506 TUB-003 8081362-8101968 protein_coding
  ENST00000305253 TUB-002 8038633-8106112 protein_coding
  ENST00000534099 TUB-001 8019244-8101780 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryENST00000305253
Transcript ID Ovary
ENST00000305253 5.332±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096V CIL_00096V_0001 VISTA 11:7589795-8192277
CIL_0009BA CIL_0009BA_0001 VISTA 11:7904499-8509136
CIL_0008M3 CIL_0008M3_0001 VISTA 11:7953590-8554788
CIL_00046S CIL_00046S_0001 CGP 11:7970251-8106112
CIL_0009BB CIL_0009BB_0001 VISTA 11:7996158-8596683
CIL_0007IX CIL_0007IX_0002 CGP 11:8019244-8169055

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region
GO:0005634 IEA nucleus
GO:0005737 TAS cytoplasm
GO:0005829 IEA cytosol
GO:0005886 IEA plasma membrane
GO:0006909 IEA phagocytosis
GO:0007602 IEA phototransduction
GO:0007605 IEA sensory perception of sound
GO:0008020 IEA G-protein coupled photoreceptor activity
GO:0009584 IEA detection of visible light
GO:0009725 IEA response to hormone
GO:0032403 IDA protein complex binding
GO:0044259 IEA multicellular organismal macromolecule metabolic process
GO:0050766 IDA positive regulation of phagocytosis
GO:0060041 IEA retina development in camera-type eye
GO:0097500 IEA receptor localization to nonmotile primary cilium

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062165 TUB Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000031028 Tub tubby candidate gene protein_coding Mus_musculus

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