C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubby bipartite transcription factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000305253 TUB-002 ENSG00000166402 9606 + 11:8038633-8106112 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryENST00000305253
Transcript ID Ovary
ENST00000305253 5.332±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096V CIL_00096V_0001 VISTA 11:7589795-8192277
CIL_0009BA CIL_0009BA_0001 VISTA 11:7904499-8509136
CIL_0008M3 CIL_0008M3_0001 VISTA 11:7953590-8554788
CIL_00046S CIL_00046S_0001 CGP 11:7970251-8106112
CIL_0009BB CIL_0009BB_0001 VISTA 11:7996158-8596683
CIL_0007IX CIL_0007IX_0002 CGP 11:8019244-8169055

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region
GO:0005634 IEA nucleus
GO:0005737 TAS cytoplasm
GO:0005829 IEA cytosol
GO:0005886 IEA plasma membrane
GO:0006909 IEA phagocytosis
GO:0007602 IEA phototransduction
GO:0007605 IEA sensory perception of sound
GO:0008020 IEA G-protein coupled photoreceptor activity
GO:0009584 IEA detection of visible light
GO:0009725 IEA response to hormone
GO:0032403 IDA protein complex binding
GO:0044259 IEA multicellular organismal macromolecule metabolic process
GO:0050766 IDA positive regulation of phagocytosis
GO:0060041 IEA retina development in camera-type eye
GO:0097500 IEA receptor localization to nonmotile primary cilium

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119474 Tub-002 protein_coding Mus_musculus 0 2091
ENSMUST00000033341 Tub-001 protein_coding Mus_musculus 0 2091
ENSDART00000089574 TUB-201 protein_coding Danio_rerio 0 556
ENSDART00000093236 TULP3-201 protein_coding Danio_rerio 0 411
ENSMUST00000147943 Tub-003 retained_intron Mus_musculus 0 296

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