C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0007IX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000062165-ENSDARG00000075986 CGP 7955 7:29102934-29184373
GeneTranscriptPositionBiotype
ENSDARG00000062165 (TUB)
Uncharacterized protein
ENSDART00000089574 (TUB-201) 29102934-29173073 protein_coding
ENSDARG00000075986 (RIC3 (1 of 2))
RIC3 acetylcholine receptor chaperone
ENSDART00000115132 (RIC3 (1 of 2)-201) 29175272-29184373 protein_coding
CIL_0007IX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000166402-ENSG00000166405 CGP 9606 11:8019244-8169055
GeneTranscriptPositionBiotype
ENSG00000248332 (TUB-AS1)
TUB antisense RNA 1
ENST00000506601 (TUB-AS1-001) 8060038-8069373 sense_intronic
ENST00000530466 (TUB-AS1-002) 8060038-8067940 sense_intronic
ENSG00000279391 (RP11-236J17.7)
ENST00000623018 (RP11-236J17.7-001) 8075573-8077781 TEC
CIL_0007IX_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031028-ENSMUSG00000048330 CGP 10090 7:109010825-109083331
GeneTranscriptPositionBiotype
ENSMUSG00000031028 (Tub)
tubby candidate gene
ENSMUST00000033341 (Tub-001) 109010825-109034460 protein_coding
ENSMUST00000119474 (Tub-002) 109017542-109030482 protein_coding
ENSMUST00000147943 (Tub-003) 109027223-109029360 retained_intron
ENSMUSG00000048330 (Ric3)
resistance to inhibitors of cholinesterase 3 homolog (C. elegans)
ENSMUST00000055993 (Ric3-001) 109034312-109083331 protein_coding
ENSMUST00000120876 (Ric3-002) 109037948-109083322 protein_coding
ENSMUST00000129629 (Ric3-006) 109080744-109083305 processed_transcript
ENSMUST00000133876 (Ric3-003) 109045382-109083311 retained_intron
ENSMUST00000137385 (Ric3-004) 109057487-109083322 retained_intron
ENSMUST00000147580 (Ric3-005) 109034312-109057824 nonsense_mediated_decay

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007IX_0001ENSDARG00000062165ENSDART00000089574ENSDARG00000075986ENSDART00000115132CIL_0007IX_0002ENSG00000248332ENST00000506601ENST00000530466ENSG00000279391ENST00000623018CIL_0007IX_0003ENSMUSG00000031028ENSMUST00000033341ENSMUST00000119474ENSMUST00000147943ENSMUSG00000048330ENSMUST00000055993ENSMUST00000120876ENSMUST00000129629ENSMUST00000133876ENSMUST00000137385ENSMUST00000147580
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007IX_0001ENSDARG00000062165ENSDART00000089574ENSDARG00000075986ENSDART00000115132CIL_0007IX_0002ENSG00000248332ENST00000506601ENST00000530466ENSG00000279391ENST00000623018CIL_0007IX_0003ENSMUSG00000031028ENSMUST00000033341ENSMUST00000119474ENSMUST00000147943ENSMUSG00000048330ENSMUST00000055993ENSMUST00000120876ENSMUST00000133876ENSMUST00000137385ENSMUST00000147580
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000062165 ENSDART00000089574 N/A N/A N/A 14.223±6.03 N/A N/A 0.157±0.05 0.096±0.01 0.071±0.00 N/A 0.897±0.00 N/A N/A N/A
ENSDARG00000075986 ENSDART00000115132 N/A N/A N/A 0.337±0.19 N/A N/A 0.050±0.00 0.283±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000248332 ENST00000506601 N/A N/A N/A 0.080±0.06 N/A N/A 0.052±0.01 N/A N/A 0.038±0.00 N/A N/A N/A N/A
ENST00000530466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.058±0.00 N/A 0.041±0.00
ENSG00000279391 ENST00000623018 N/A 0.011±0.00 0.187±0.00 0.018±0.00 N/A N/A 0.045±0.03 N/A N/A 0.020±0.00 N/A 0.005±0.00 N/A 0.252±0.07
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031028 ENSMUST00000033341 0.518±0.23 14.313±5.67 N/A 27.410±5.20 0.554±0.24 0.699±0.03 0.116±0.02 0.180±0.09 0.026±0.01 0.243±0.02 0.082±0.00 0.962±0.42 0.100±0.04 2.502±0.76
ENSMUST00000119474 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.779±0.19 N/A N/A
ENSMUST00000147943 N/A N/A N/A N/A N/A N/A N/A N/A 0.069±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000048330 ENSMUST00000055993 0.784±0.44 6.988±0.00 N/A N/A N/A 0.398±0.13 0.109±0.03 0.117±0.02 0.077±0.04 0.447±0.02 0.225±0.07 0.614±0.30 0.136±0.03 1.589±0.16
ENSMUST00000120876 N/A N/A N/A N/A N/A N/A N/A N/A 0.063±0.02 N/A 0.349±0.00 1.668±0.00 0.142±0.00 N/A
ENSMUST00000129629 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133876 N/A N/A N/A N/A N/A N/A N/A N/A 0.027±0.01 N/A N/A N/A N/A N/A
ENSMUST00000137385 N/A 115.715±23.29 N/A N/A N/A 1.925±0.39 N/A 0.892±0.00 0.079±0.03 1.953±0.27 N/A N/A N/A N/A
ENSMUST00000147580 0.601±0.00 8.256±0.45 N/A 8.576±0.00 0.661±0.16 N/A 0.055±0.00 N/A 0.100±0.07 0.211±0.00 0.343±0.01 0.586±0.14 0.143±0.00 1.539±0.10

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