C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | tubby bipartite transcription factor | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000299506  |
TUB-003 |
ENSG00000166402 |
9606 | + |
11:8081362-8101968  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00096V | CIL_00096V_0001 | VISTA | 11:7589795-8192277 |
| CIL_0009BA | CIL_0009BA_0001 | VISTA | 11:7904499-8509136 |
| CIL_0008M3 | CIL_0008M3_0001 | VISTA | 11:7953590-8554788 |
| CIL_00046S | CIL_00046S_0001 | CGP | 11:7970251-8106112 |
| CIL_0009BB | CIL_0009BB_0001 | VISTA | 11:7996158-8596683 |
| CIL_0007IX | CIL_0007IX_0002 | CGP | 11:8019244-8169055 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005576 | IEA | extracellular region |
| GO:0005634 | IEA | nucleus |
| GO:0005737 | TAS | cytoplasm |
| GO:0005886 | IEA | plasma membrane |
| GO:0006909 | IEA | phagocytosis |
| GO:0032403 | IDA | protein complex binding |
| GO:0050766 | IDA | positive regulation of phagocytosis |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000033341
|
Tub-001 | protein_coding | Mus_musculus | 0 | 2324 |
|
ENSMUST00000119474
|
Tub-002 | protein_coding | Mus_musculus | 0 | 2093 |
|
ENSDART00000089574
|
TUB-201 | protein_coding | Danio_rerio | 0 | 556 |
|
ENSDART00000093236
|
TULP3-201 | protein_coding | Danio_rerio | 0 | 411 |
|
ENSMUST00000147943
|
Tub-003 | retained_intron | Mus_musculus | 0 | 296 |
