C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00046S_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000175390-ENSG00000166402 CGP 9606 11:7970251-8106112
GeneTranscriptPositionBiotype
ENSG00000175390 (EIF3F)
eukaryotic translation initiation factor 3, subunit F 		ENST00000309828 (EIF3F-201) 7987320-7996169 protein_coding
ENST00000528653 (EIF3F-006) 7987356-7992993 retained_intron
ENST00000528763 (EIF3F-008) 7994698-7996018 retained_intron
ENST00000530219 (EIF3F-005) 7992127-7996169 retained_intron
ENST00000531329 (EIF3F-004) 7987337-7996075 nonsense_mediated_decay
ENST00000531572 (EIF3F-009) 7995014-7995633 protein_coding
ENST00000532882 (EIF3F-007) 7991822-7992998 retained_intron
ENST00000533626 (EIF3F-001) 7970251-8001862 protein_coding
ENSG00000248332 (TUB-AS1)
TUB antisense RNA 1 		ENST00000506601 (TUB-AS1-001) 8060038-8069373 sense_intronic
ENST00000530466 (TUB-AS1-002) 8060038-8067940 sense_intronic
ENSG00000255420 (CASC23)
cancer susceptibility candidate 23 (non-protein coding) 		ENST00000534076 (CASC23-001) 8011278-8016489 antisense
ENSG00000279391 (RP11-236J17.7)
 ENST00000623018 (RP11-236J17.7-001) 8075573-8077781 TEC
CIL_00046S_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031029-ENSMUSG00000031028 CGP 10090 7:108934417-109034460
GeneTranscriptPositionBiotype
ENSMUSG00000031028 (Tub)
tubby candidate gene 		ENSMUST00000033341 (Tub-001) 109010825-109034460 protein_coding
ENSMUST00000119474 (Tub-002) 109017542-109030482 protein_coding
ENSMUST00000147943 (Tub-003) 109027223-109029360 retained_intron
ENSMUSG00000031029 (Eif3f)
eukaryotic translation initiation factor 3, subunit F 		ENSMUST00000033342 (Eif3f-001) 108934417-108942951 protein_coding
ENSMUST00000147369 (Eif3f-003) 108940308-108941008 retained_intron
ENSMUST00000153596 (Eif3f-002) 108938395-108940476 retained_intron
ENSMUSG00000048330 (Ric3)
resistance to inhibitors of cholinesterase 3 homolog (C. elegans) 		ENSMUST00000055993 (Ric3-001) 109034312-109083331 protein_coding
ENSMUST00000120876 (Ric3-002) 109037948-109083322 protein_coding
ENSMUST00000129629 (Ric3-006) 109080744-109083305 processed_transcript
ENSMUST00000133876 (Ric3-003) 109045382-109083311 retained_intron
ENSMUST00000137385 (Ric3-004) 109057487-109083322 retained_intron
ENSMUST00000147580 (Ric3-005) 109034312-109057824 nonsense_mediated_decay
ENSMUSG00000097220 (Gm26599)
predicted gene, 26599 		ENSMUST00000180590 (Gm26599-201) 108950754-108961535 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00046S_0001ENSG00000175390ENST00000309828ENST00000528653ENST00000528763ENST00000530219ENST00000531329ENST00000531572ENST00000532882ENST00000533626ENSG00000248332ENST00000506601ENST00000530466ENSG00000255420ENST00000534076ENSG00000279391ENST00000623018CIL_00046S_0002ENSMUSG00000031028ENSMUST00000033341ENSMUST00000119474ENSMUST00000147943ENSMUSG00000031029ENSMUST00000033342ENSMUST00000147369ENSMUST00000153596ENSMUSG00000048330ENSMUST00000055993ENSMUST00000120876ENSMUST00000129629ENSMUST00000133876ENSMUST00000137385ENSMUST00000147580ENSMUSG00000097220ENSMUST00000180590
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00046S_0001ENSG00000175390ENST00000309828ENST00000531329ENST00000533626ENSG00000248332ENST00000506601ENST00000530466ENSG00000255420ENST00000534076ENSG00000279391ENST00000623018CIL_00046S_0002ENSMUSG00000031028ENSMUST00000033341ENSMUST00000119474ENSMUST00000147943ENSMUSG00000031029ENSMUST00000033342ENSMUSG00000048330ENSMUST00000055993ENSMUST00000120876ENSMUST00000133876ENSMUST00000137385ENSMUST00000147580ENSMUSG00000097220ENSMUST00000180590
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000175390 ENST00000309828 76.844±0.00 95.052±0.00 4.830±0.00 20.510±13.39 35.063±26.71 56.378±45.74 18.789±12.32 29.500±18.17 18.771±8.85 40.540±32.78 45.836±31.50 118.289±75.50 157.450±17.14 83.719±1.39
ENST00000528653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528763 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530219 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.273±0.00 5.523±0.00 N/A N/A
ENST00000531572 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533626 1.195±0.00 3.078±0.00 N/A N/A 1.610±0.00 2.744±0.00 N/A 1.884±0.00 1.978±1.56 0.914±0.00 1.334±0.75 2.764±0.00 N/A 2.420±0.45
ENSG00000248332 ENST00000506601 N/A N/A N/A 0.080±0.06 N/A N/A 0.052±0.01 N/A N/A 0.038±0.00 N/A N/A N/A N/A
ENST00000530466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.058±0.00 N/A 0.041±0.00
ENSG00000255420 ENST00000534076 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.098±2.11
ENSG00000279391 ENST00000623018 N/A 0.011±0.00 0.187±0.00 0.018±0.00 N/A N/A 0.045±0.03 N/A N/A 0.020±0.00 N/A 0.005±0.00 N/A 0.252±0.07
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031028 ENSMUST00000033341 0.518±0.23 14.313±5.67 N/A 27.410±5.20 0.554±0.24 0.699±0.03 0.116±0.02 0.180±0.09 0.026±0.01 0.243±0.02 0.082±0.00 0.962±0.42 0.100±0.04 2.502±0.76
ENSMUST00000119474 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.779±0.19 N/A N/A
ENSMUST00000147943 N/A N/A N/A N/A N/A N/A N/A N/A 0.069±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000031029 ENSMUST00000033342 54.566±13.96 52.646±5.14 19.382±5.76 13.167±1.30 63.907±7.66 72.359±6.07 28.842±10.07 48.358±5.02 17.317±5.87 56.748±7.34 14.437±5.25 85.710±36.10 20.395±9.76 29.960±14.12
ENSMUST00000147369 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153596 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000048330 ENSMUST00000055993 0.784±0.44 6.988±0.00 N/A N/A N/A 0.398±0.13 0.109±0.03 0.117±0.02 0.077±0.04 0.447±0.02 0.225±0.07 0.614±0.30 0.136±0.03 1.589±0.16
ENSMUST00000120876 N/A N/A N/A N/A N/A N/A N/A N/A 0.063±0.02 N/A 0.349±0.00 1.668±0.00 0.142±0.00 N/A
ENSMUST00000129629 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133876 N/A N/A N/A N/A N/A N/A N/A N/A 0.027±0.01 N/A N/A N/A N/A N/A
ENSMUST00000137385 N/A 115.715±23.29 N/A N/A N/A 1.925±0.39 N/A 0.892±0.00 0.079±0.03 1.953±0.27 N/A N/A N/A N/A
ENSMUST00000147580 0.601±0.00 8.256±0.45 N/A 8.576±0.00 0.661±0.16 N/A 0.055±0.00 N/A 0.100±0.07 0.211±0.00 0.343±0.01 0.586±0.14 0.143±0.00 1.539±0.10
ENSMUSG00000097220 ENSMUST00000180590 0.029±0.02 0.033±0.01 0.005±0.00 0.108±0.05 0.045±0.03 0.050±0.03 0.026±0.00 0.031±0.02 0.039±0.04 0.028±0.02 0.016±0.01 0.067±0.04 0.015±0.01 0.126±0.07

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