C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein D1 polypeptide 16kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167088 SNRPD1 9606 + 18:21612267-21630456 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000300413 SNRPD1-001 21612267-21630456 protein_coding
  ENST00000579618 SNRPD1-003 21612314-21629109 protein_coding
  ENST00000582475 SNRPD1-002 21612331-21629479 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000300413ENST00000579618ENST00000582475
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000300413 2.818±0.00 6.435±0.00 N/A 5.605±0.11 2.060±0.29 2.457±0.04 1.345±0.69 2.548±1.05 1.993±0.00 1.393±0.18 1.388±0.33 13.995±11.30 16.300±11.05 17.267±11.21
ENST00000579618 5.905±0.00 N/A 5.297±0.00 N/A 6.897±0.03 11.723±0.00 3.022±0.94 10.963±0.00 9.019±2.95 7.338±4.39 5.869±0.00 23.989±18.02 28.131±6.94 24.745±5.76
ENST00000582475 6.653±0.00 13.199±0.00 1.480±0.00 3.998±1.90 4.452±0.00 5.313±2.74 1.328±0.96 5.575±0.00 3.016±1.73 3.674±0.00 1.409±0.00 12.404±0.00 13.609±1.56 12.065±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084R CIL_00084R_0001 VISTA 18:21458991-22061961
CIL_0005CM CIL_0005CM_0001 CGP 18:21529281-21630456
CIL_0005NW CIL_0005NW_0001 CGP 18:21612267-21704805

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000245 TAS spliceosomal complex assembly
GO:0000387 IDA spliceosomal snRNP assembly
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005685 IDA U1 snRNP
GO:0005687 IDA U4 snRNP
GO:0005689 IDA U12-type spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0005829 IDA cytosol
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0030532 TAS small nuclear ribonucleoprotein complex
GO:0034660 TAS ncRNA metabolic process
GO:0034709 IDA methylosome
GO:0034715 IDA pICln-Sm protein complex
GO:0034719 IDA SMN-Sm protein complex
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011648 snrpd1 small nuclear ribonucleoprotein D1 polypeptide protein_coding Danio_rerio
ENSMUSG00000002477 Snrpd1 small nuclear ribonucleoprotein D1 protein_coding Mus_musculus

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