C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein D1 polypeptide 16kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000300413 SNRPD1-001 ENSG00000167088 9606 + 18:21612267-21630456 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000300413
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000300413 2.818±0.00 6.435±0.00 5.605±0.11 2.060±0.29 2.457±0.04 1.345±0.69 2.548±1.05 1.993±0.00 1.393±0.18 1.388±0.33 13.995±11.30 16.300±11.05 17.267±11.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084R CIL_00084R_0001 VISTA 18:21458991-22061961
CIL_0005CM CIL_0005CM_0001 CGP 18:21529281-21630456
CIL_0005NW CIL_0005NW_0001 CGP 18:21612267-21704805

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000245 TAS spliceosomal complex assembly
GO:0000387 IDA spliceosomal snRNP assembly
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005685 IDA U1 snRNP
GO:0005687 IDA U4 snRNP
GO:0005689 IDA U12-type spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0005829 IDA cytosol
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0030532 TAS small nuclear ribonucleoprotein complex
GO:0034660 TAS ncRNA metabolic process
GO:0034709 IDA methylosome
GO:0034715 IDA pICln-Sm protein complex
GO:0034719 IDA SMN-Sm protein complex
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000002551 Snrpd1-201 protein_coding Mus_musculus 0 676
ENSMUST00000121195 Gm14277-001 processed_pseudogene Mus_musculus 0 532

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