C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein D1 polypeptide 16kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000579618 SNRPD1-003 ENSG00000167088 9606 + 18:21612314-21629109 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000579618
Transcript ID Adipose Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000579618 5.905±0.00 5.297±0.00 6.897±0.03 11.723±0.00 3.022±0.94 10.963±0.00 9.019±2.95 7.338±4.39 5.869±0.00 23.989±18.02 28.131±6.94 24.745±5.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084R CIL_00084R_0001 VISTA 18:21458991-22061961
CIL_0005CM CIL_0005CM_0001 CGP 18:21529281-21630456
CIL_0005NW CIL_0005NW_0001 CGP 18:21612267-21704805

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000002551 Snrpd1-201 protein_coding Mus_musculus 1.00053e-42 176
ENSMUST00000121195 Gm14277-001 processed_pseudogene Mus_musculus 2e-35 152

Loading