C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TruB pseudouridine (psi) synthase family member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167112 TRUB2 9606 - 9:128309103-128322742 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000372890 TRUB2-001 128309103-128322742 protein_coding
  ENST00000460320 TRUB2-003 128309693-128322413 processed_transcript
  ENST00000461180 TRUB2-002 128309784-128311354 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372890ENST00000460320
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372890 6.927±0.00 13.879±0.00 13.171±7.87 5.289±4.50 4.361±3.04 7.709±4.05 9.296±7.84 9.943±8.81 2.396±1.64 5.669±0.00 13.996±8.85 13.489±4.94 11.335±7.86
ENST00000460320 N/A N/A N/A 1.198±0.00 2.210±0.00 9.387±0.00 4.709±0.00 2.555±0.00 N/A 3.288±1.62 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007E8 CIL_0007E8_0001 CGP 9:128309103-128334072

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001522 IEA pseudouridine synthesis
GO:0003723 IEA RNA binding
GO:0006396 IEA RNA processing
GO:0008033 IEA tRNA processing
GO:0009451 IEA RNA modification
GO:0009982 IEA pseudouridine synthase activity
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000028379 trub2 TruB pseudouridine (psi) synthase homolog 2 (E. coli) protein_coding Danio_rerio
ENSMUSG00000039826 Trub2 TruB pseudouridine (psi) synthase homolog 2 (E. coli) protein_coding Mus_musculus

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