C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TruB pseudouridine (psi) synthase homolog 2 (E. coli)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039826 Trub2 10090 - 2:29761224-29788502 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000048044 Trub2-001 29776110-29788502 protein_coding
  ENSMUST00000113803 Trub2-004 29783219-29787630 retained_intron
  ENSMUST00000113807 Trub2-002 29761224-29787648 protein_coding
  ENSMUST00000148120 Trub2-005 29779211-29782196 retained_intron
  ENSMUST00000156846 Trub2-003 29774684-29787660 nonsense_mediated_decay
  ENSMUST00000175644 Trub2-006 29784920-29787633 retained_intron
  ENSMUST00000176167 Trub2-007 29778753-29782342 retained_intron
  ENSMUST00000176312 Trub2-009 29777688-29787634 nonsense_mediated_decay
  ENSMUST00000177133 Trub2-010 29778594-29787671 nonsense_mediated_decay
  ENSMUST00000177467 Trub2-008 29777757-29787622 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000048044ENSMUST00000148120ENSMUST00000156846ENSMUST00000176312ENSMUST00000177467
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000048044 12.099±2.11 8.140±0.94 4.404±0.86 3.927±1.29 13.344±4.44 4.222±0.59 7.645±0.60 8.254±0.91 4.023±1.06 7.465±1.47 5.661±1.78 8.512±2.46 2.903±1.19
ENSMUST00000148120 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.215±0.00 6.697±0.00
ENSMUST00000156846 4.933±1.81 N/A 1.617±0.16 4.615±1.41 N/A N/A 1.488±0.15 N/A 1.727±0.41 N/A 1.891±0.13 3.311±0.77 1.644±0.65
ENSMUST00000176312 N/A N/A N/A 13.161±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177467 N/A N/A N/A 12.697±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 8.426±2.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007E8 CIL_0007E8_0002 CGP 2:29761224-29797935

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001522 IEA pseudouridine synthesis
GO:0003723 IEA RNA binding
GO:0005575 ND cellular_component
GO:0006396 IEA RNA processing
GO:0008033 IEA tRNA processing
GO:0008150 ND biological_process
GO:0009982 IEA pseudouridine synthase activity
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000028379 trub2 TruB pseudouridine (psi) synthase homolog 2 (E. coli) protein_coding Danio_rerio
ENSG00000167112 TRUB2 TruB pseudouridine (psi) synthase family member 2 protein_coding Homo_sapiens

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