C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007E8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000167112-ENSG00000167113 CGP 9606 9:128309103-128334072
GeneTranscriptPositionBiotype
ENSG00000167112 (TRUB2)
TruB pseudouridine (psi) synthase family member 2 		ENST00000372890 (TRUB2-001) 128309103-128322742 protein_coding
ENST00000460320 (TRUB2-003) 128309693-128322413 processed_transcript
ENST00000461180 (TRUB2-002) 128309784-128311354 processed_transcript
ENSG00000167113 (COQ4)
coenzyme Q4 		ENST00000300452 (COQ4-001) 128322536-128334072 protein_coding
ENST00000372875 (COQ4-003) 128322852-128326400 protein_coding
ENST00000461102 (COQ4-002) 128330412-128334068 processed_transcript
ENST00000608951 (COQ4-005) 128322582-128323584 protein_coding
ENST00000609948 (COQ4-004) 128322544-128323586 protein_coding
ENSG00000272696 (RP11-339B21.13)
 ENST00000609315 (RP11-339B21.13-001) 128316337-128316909 antisense
CIL_0007E8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039826-ENSMUSG00000026798 CGP 10090 2:29761224-29797935
GeneTranscriptPositionBiotype
ENSMUSG00000026798 (Coq4)
coenzyme Q4 homolog (yeast) 		ENSMUST00000028137 (Coq4-001) 29788259-29797743 protein_coding
ENSMUST00000138233 (Coq4-002) 29795565-29796986 retained_intron
ENSMUST00000142694 (Coq4-004) 29789977-29790638 retained_intron
ENSMUST00000143616 (Coq4-003) 29787493-29797935 nonsense_mediated_decay
ENSMUST00000148791 (Coq4-005) 29788271-29796002 protein_coding
ENSMUST00000176348 (Coq4-006) 29788220-29796602 nonsense_mediated_decay
ENSMUSG00000039826 (Trub2)
TruB pseudouridine (psi) synthase homolog 2 (E. coli) 		ENSMUST00000048044 (Trub2-001) 29776110-29788502 protein_coding
ENSMUST00000113803 (Trub2-004) 29783219-29787630 retained_intron
ENSMUST00000113807 (Trub2-002) 29761224-29787648 protein_coding
ENSMUST00000148120 (Trub2-005) 29779211-29782196 retained_intron
ENSMUST00000156846 (Trub2-003) 29774684-29787660 nonsense_mediated_decay
ENSMUST00000175644 (Trub2-006) 29784920-29787633 retained_intron
ENSMUST00000176167 (Trub2-007) 29778753-29782342 retained_intron
ENSMUST00000176312 (Trub2-009) 29777688-29787634 nonsense_mediated_decay
ENSMUST00000177133 (Trub2-010) 29778594-29787671 nonsense_mediated_decay
ENSMUST00000177467 (Trub2-008) 29777757-29787622 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007E8_0001ENSG00000167112ENST00000372890ENST00000460320ENST00000461180ENSG00000167113ENST00000300452ENST00000372875ENST00000461102ENST00000608951ENST00000609948ENSG00000272696ENST00000609315CIL_0007E8_0002ENSMUSG00000026798ENSMUST00000028137ENSMUST00000138233ENSMUST00000142694ENSMUST00000143616ENSMUST00000148791ENSMUST00000176348ENSMUSG00000039826ENSMUST00000048044ENSMUST00000113803ENSMUST00000113807ENSMUST00000148120ENSMUST00000156846ENSMUST00000175644ENSMUST00000176167ENSMUST00000176312ENSMUST00000177133ENSMUST00000177467
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007E8_0001ENSG00000167112ENST00000372890ENST00000460320ENSG00000167113ENST00000300452ENST00000372875ENST00000461102ENST00000608951ENST00000609948ENSG00000272696ENST00000609315CIL_0007E8_0002ENSMUSG00000026798ENSMUST00000028137ENSMUST00000138233ENSMUST00000148791ENSMUST00000176348ENSMUSG00000039826ENSMUST00000048044ENSMUST00000148120ENSMUST00000156846ENSMUST00000176312ENSMUST00000177467
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000167112 ENST00000372890 6.927±0.00 13.879±0.00 N/A 13.171±7.87 5.289±4.50 4.361±3.04 7.709±4.05 9.296±7.84 9.943±8.81 2.396±1.64 5.669±0.00 13.996±8.85 13.489±4.94 11.335±7.86
ENST00000460320 N/A N/A N/A N/A 1.198±0.00 2.210±0.00 9.387±0.00 4.709±0.00 2.555±0.00 N/A 3.288±1.62 N/A N/A N/A
ENST00000461180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000167113 ENST00000300452 11.646±0.00 18.383±0.00 N/A 14.095±0.00 16.282±0.00 4.725±3.17 9.198±0.00 27.856±0.00 13.505±11.48 17.038±0.00 7.127±3.75 19.676±0.98 21.666±4.43 14.210±0.00
ENST00000372875 N/A N/A 1.889±0.00 N/A N/A N/A N/A N/A N/A 2.666±0.00 N/A N/A N/A N/A
ENST00000461102 N/A 3.476±0.00 0.744±0.00 2.049±0.00 1.767±0.00 0.797±0.31 0.821±0.00 2.694±1.46 N/A 0.969±0.30 N/A 3.684±0.67 N/A 4.920±2.73
ENST00000608951 N/A N/A 2.478±0.00 N/A N/A N/A N/A N/A N/A N/A 2.584±0.00 N/A N/A N/A
ENST00000609948 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.942±0.00 N/A N/A
ENSG00000272696 ENST00000609315 0.166±0.00 0.556±0.00 N/A 0.739±0.26 0.479±0.00 0.639±0.45 0.519±0.42 0.861±0.00 0.218±0.00 0.946±0.27 2.108±0.00 0.990±0.65 0.349±0.19 0.915±0.28
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026798 ENSMUST00000028137 7.773±1.35 9.391±1.67 4.782±0.58 7.474±0.84 6.234±1.36 4.768±0.58 5.779±0.84 12.243±1.14 4.581±1.08 5.633±0.08 N/A 7.640±2.90 4.404±1.24 20.257±8.33
ENSMUST00000138233 N/A 14.437±0.00 N/A N/A N/A 6.610±0.00 N/A N/A N/A 6.411±0.00 N/A N/A 2.838±0.00 16.552±6.17
ENSMUST00000142694 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148791 N/A 73.393±11.06 N/A N/A 15.763±2.12 18.691±6.75 N/A 26.774±0.42 9.969±1.87 12.054±0.47 N/A 19.938±3.19 N/A N/A
ENSMUST00000176348 N/A 16.225±3.00 N/A N/A 12.776±2.20 13.259±2.32 10.668±0.59 21.116±3.18 5.529±0.44 7.461±1.21 N/A 14.893±2.62 6.356±0.00 36.311±0.97
ENSMUSG00000039826 ENSMUST00000048044 12.099±2.11 8.140±0.94 4.404±0.86 3.927±1.29 13.344±4.44 4.222±0.59 7.645±0.60 8.254±0.91 4.023±1.06 7.465±1.47 5.661±1.78 8.512±2.46 2.903±1.19 N/A
ENSMUST00000113803 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000113807 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148120 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.215±0.00 6.697±0.00 N/A
ENSMUST00000156846 4.933±1.81 N/A 1.617±0.16 4.615±1.41 N/A N/A 1.488±0.15 N/A 1.727±0.41 N/A 1.891±0.13 3.311±0.77 1.644±0.65 N/A
ENSMUST00000175644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176167 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176312 N/A N/A N/A 13.161±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177133 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177467 N/A N/A N/A 12.697±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 8.426±2.05 N/A

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