C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin related modifier 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372853 URM1-001 ENSG00000167118 9606 + 9:128371319-128390734 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372853
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372853 25.856±0.00 40.781±0.00 1.647±0.00 12.628±8.79 18.742±17.12 14.816±13.41 4.941±3.46 5.609±3.88 3.743±1.68 2.368±0.00 8.596±1.57 22.769±12.21 35.260±4.55 30.817±4.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007EA CIL_0007EA_0001 CGP 9:128340646-128392016
CIL_0000ST CIL_0000ST_0002 CGP 9:128371319-128437351

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002098 IMP tRNA wobble uridine modification
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005829 IC cytosol
GO:0016783 IDA sulfurtransferase activity
GO:0032447 IEA protein urmylation
GO:0034227 IMP:IEA tRNA thio-modification
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000091142 Urm1-001 protein_coding Mus_musculus 0 773
ENSMUST00000123021 Urm1-006 retained_intron Mus_musculus 0 520
ENSMUST00000156944 Urm1-002 processed_transcript Mus_musculus 0 390
ENSMUST00000149379 Urm1-004 processed_transcript Mus_musculus 0 305
ENSMUST00000147325 Urm1-003 processed_transcript Mus_musculus 0 292

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