C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tropomyosin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000300933 TPM4-002 ENSG00000167460 9606 + 19:16076306-16103005 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000300933
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000300933 155.520±0.00 112.862±0.00 27.187±22.73 42.647±29.67 63.474±55.92 14.084±9.92 78.845±0.00 22.777±13.28 188.523±181.28 11.062±0.00 152.437±93.80 209.359±31.71 78.968±17.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000IM CIL_0000IM_0001 CGP 19:16067021-16134234

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001649 IDA osteoblast differentiation
GO:0001725 IDA stress fiber
GO:0003779 IEA actin binding
GO:0005509 NAS calcium ion binding
GO:0005829 TAS cytosol
GO:0005856 TAS cytoskeleton
GO:0005862 TAS muscle thin filament tropomyosin
GO:0005925 IDA focal adhesion
GO:0006928 TAS cellular component movement
GO:0006936 TAS muscle contraction
GO:0008307 TAS structural constituent of muscle
GO:0016020 IDA membrane
GO:0030049 TAS muscle filament sliding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000003575 Tpm4-001 protein_coding Mus_musculus 0 1122
ENSDART00000123125 tpm4a-203 protein_coding Danio_rerio 0 475
ENSDART00000036075 tpm4a-202 protein_coding Danio_rerio 0 416
ENSDART00000142717 tpm4a-001 protein_coding Danio_rerio 0 416
ENSDART00000009054 tpm4a-201 protein_coding Danio_rerio 0 414
ENSDART00000138978 tpm4a-002 protein_coding Danio_rerio 0 414

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