C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: trafficking protein particle complex 2-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167515 TRAPPC2L 9606 + 16:88856220-88862686 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000301021 TRAPPC2L-001 88857086-88862686 protein_coding
  ENST00000561840 TRAPPC2L-011 88857168-88861049 protein_coding
  ENST00000562125 TRAPPC2L-006 88859301-88861105 retained_intron
  ENST00000562792 TRAPPC2L-012 88857127-88859729 nonsense_mediated_decay
  ENST00000563514 TRAPPC2L-014 88859771-88861130 retained_intron
  ENST00000564365 TRAPPC2L-003 88856220-88861415 protein_coding
  ENST00000564404 TRAPPC2L-007 88857144-88861110 nonsense_mediated_decay
  ENST00000564547 TRAPPC2L-013 88857098-88859512 retained_intron
  ENST00000565205 TRAPPC2L-005 88857131-88861287 nonsense_mediated_decay
  ENST00000565309 TRAPPC2L-009 88858617-88860186 retained_intron
  ENST00000565504 TRAPPC2L-002 88857127-88862676 protein_coding
  ENST00000567312 TRAPPC2L-004 88857135-88861112 protein_coding
  ENST00000567895 TRAPPC2L-010 88857086-88861351 protein_coding
  ENST00000568583 TRAPPC2L-008 88857141-88861309 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000301021ENST00000561840ENST00000562125ENST00000564365ENST00000564404ENST00000565205ENST00000567312ENST00000567895ENST00000568583
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000301021 2.023±0.00 4.972±0.00 3.835±0.72 1.619±0.98 2.146±0.00 1.404±1.23 3.462±0.00 N/A N/A 0.636±0.00 5.732±3.84 6.899±0.83 11.046±0.00
ENST00000561840 N/A 15.691±0.00 11.826±0.00 8.611±6.28 10.343±0.00 10.936±0.00 N/A N/A 20.634±0.00 4.478±2.67 24.618±0.00 N/A N/A
ENST00000562125 N/A N/A 8.652±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564365 N/A N/A N/A N/A N/A 0.356±0.00 N/A N/A N/A 2.547±0.00 N/A N/A N/A
ENST00000564404 N/A N/A N/A N/A N/A N/A N/A N/A 2.511±0.00 1.796±0.00 N/A N/A N/A
ENST00000565205 N/A N/A N/A N/A 2.579±0.00 N/A N/A 1.075±0.00 N/A N/A N/A N/A N/A
ENST00000567312 11.038±0.00 19.718±0.00 16.023±0.00 16.200±0.00 11.338±0.00 10.633±0.00 18.037±0.00 N/A N/A 9.791±0.00 11.830±0.00 N/A 39.728±7.22
ENST00000567895 N/A N/A N/A N/A N/A N/A 2.096±0.00 N/A N/A 0.877±0.00 N/A N/A N/A
ENST00000568583 4.843±0.00 N/A 7.931±0.00 1.739±0.00 2.414±0.00 1.759±0.00 2.943±0.00 1.629±0.00 N/A 1.093±0.00 4.480±0.87 10.770±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091T CIL_00091T_0001 VISTA 16:88690989-89294615
CIL_0006AL CIL_0006AL_0002 CGP 16:88809339-88856970
CIL_000330 CIL_000330_0001 CGP 16:88813734-88862686
CIL_00032Z CIL_00032Z_0001 CGP 16:88856220-88866660

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005737 IDA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0005801 IEA cis-Golgi network
GO:0006810 IEA transport
GO:0006888 IEA ER to Golgi vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000015013 Trappc2l trafficking protein particle complex 2-like protein_coding Mus_musculus

Loading