C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tubulin, alpha 1c
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167553 TUBA1C 9606 + 12:49188736-49274603 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000301072 TUBA1C-001 49264907-49274603 protein_coding
  ENST00000541364 TUBA1C-002 49227926-49273334 protein_coding
  ENST00000548470 TUBA1C-007 49269786-49273166 retained_intron
  ENST00000549183 TUBA1C-006 49265081-49270196 protein_coding
  ENST00000549554 TUBA1C-005 49188736-49208901 processed_transcript
  ENST00000549818 TUBA1C-008 49227927-49269527 nonsense_mediated_decay
  ENST00000550574 TUBA1C-004 49208546-49256489 processed_transcript
  ENST00000552125 TUBA1C-009 49228043-49269937 nonsense_mediated_decay
  ENST00000552448 TUBA1C-003 49227930-49273328 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderKidneyMuscleOvaryPlacentaENST00000541364ENST00000548470ENST00000549183
Transcript ID Bladder Kidney Muscle Ovary Placenta
ENST00000541364 0.584±0.00 1.831±0.00 N/A N/A N/A
ENST00000548470 N/A N/A N/A N/A 73.364±28.06
ENST00000549183 N/A N/A 3.837±0.73 29.698±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000B CIL_00000B_0001 CGP 12:49127782-49189324
CIL_00009R CIL_00009R_0001 CGP 12:49188736-49298686

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005198 TAS structural molecule activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005874 TAS microtubule
GO:0005881 IEA cytoplasmic microtubule
GO:0006184 IEA GTP catabolic process
GO:0006457 TAS protein folding
GO:0007017 TAS microtubule-based process
GO:0030705 TAS cytoskeleton-dependent intracellular transport
GO:0031982 IDA vesicle
GO:0043234 IEA protein complex
GO:0044267 TAS cellular protein metabolic process
GO:0051084 TAS 'de novo' posttranslational protein folding
GO:0051258 IEA protein polymerization
GO:0051301 TAS cell division

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000043091 Tuba1c tubulin, alpha 1C protein_coding Mus_musculus

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